FMO06954.5prime Sequence
1088 bp (972 high quality bases) assembled on 2008-10-01
> FMO06954.5prime
CAGTCGACATGGCGGAGCGAGAGAGGGAGGCAATGTCAGCCTCTCTGAGC
CGTCTGCTGAGAACCTTGAGCTCGGCTTCGATGAGCAGACGTCACTGCCC
CCTCGCTCTCCTTCAGCCCATCCCCTTGCATCAGAGCGAGATAGCGCTGG
GGAGCGCGAGTAGCGGGGGGAGTGCAGAGAGATGCTGCAGCAGTTGCAGC
GATGATAGCAACAACAATGAACGCTGTAAGAGCGCTGAGAGAGGGACAGC
AGCAGATGAGGTGGGCGAGGAAGGAAGGGAGGAGGTCGAGCTGGAATCCA
AGGAGGATGCCGTCGAGGGAGAGCAAGATGAGCTGGAGCTCAAGAGAGAT
AGCAGTACCGTTAACGTCAATGTGGTGAGAGCCAACTTCAAATGCAATGA
CATGGAATGTTCTCTAGTCCTGGGCGACTATGTGAATGGCTTCCTTGGCA
GTTTCCTATCGAAGGGCCTAAAGACCAATCAGCTGGTTGTGAATACGGAT
GAGAAGACCCTGCGACCAGTTGCACGTCTGAAGGAACCGCGCGATCTCTT
CGCCCTGCCGAAGGACAAGGACAATGACTGCTCACAGCAGGCCCCCAGAT
GGCCGGTGGAATGCCAGGTCATCGAGGAGCGCATCATACACATTCCGTAC
GTGCCCGCTGTGCCGGAGCCGCTCAATGCTCCGACGGGAAACGAGCTGAA
ACCGCGTCCCGTTGGCGAGGAGAACGGCATTGTGGTGTTCAGCTACAGTC
CAAATTAGTGCCGTCAACTATGAAAAGCCAAGGCGAAGAAGGAAGACGAT
GAGTCCAGCGACGAATCGGACTATTCCTCGGGACTCTCGCCAGGATTCGA
CGCCGCCGAGCCGATCCACGCCCATGCGCCTGGGCCGGCGGCGGTGAATG
TGCACCTGGCAACTTGAACAGCGTGTCAAGATGATCAACATTGTGGACCA
TCCGGTCAACCAGTGGCGTCCTAGACGTCAACGATGACTATACTAATGAT
GAATACGATACTTCTGTGTTTATTGGGGCGGAATCGGTGGAGGCCCAAGA
GAACGTCCATCATAATGGTTCTCTTTCGGGCGATAAGA
FMO06954.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:21:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NnaD-RB | 3750 | CG44533-RB | 153..1214 | 9..1073 | 4725 | 96.9 | Plus |
| NnaD-RA | 4542 | CG44533-RA | 153..1214 | 9..1073 | 4725 | 96.9 | Plus |
| NnaD-RG | 3183 | CG44533-RG | 153..914 | 9..771 | 3790 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:21:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13696814..13697244 | 9..439 | 2155 | 100 | Plus |
| X | 23542271 | X | 13706147..13706328 | 438..619 | 910 | 100 | Plus |
| X | 23542271 | X | 13709402..13709558 | 615..772 | 740 | 99.4 | Plus |
| X | 23542271 | X | 13709836..13710067 | 778..1011 | 735 | 91.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:21:43 has no hits.
FMO06954.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:44:46 Download gff for
FMO06954.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NnaD-RA | 145..1156 | 1..1014 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:21:50 Download gff for
FMO06954.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32627-RB | 145..1156 | 1..1014 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:03:31 Download gff for
FMO06954.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NnaD-RA | 145..1156 | 1..1014 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:03:31 Download gff for
FMO06954.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13696806..13697243 | 1..438 | 99 | -> | Plus |
| X | 13706148..13706326 | 439..617 | 100 | -> | Plus |
| X | 13709405..13709557 | 618..771 | 99 | -> | Plus |
| X | 13709829..13710070 | 772..1014 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:44:46 Download gff for
FMO06954.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13590839..13591276 | 1..438 | 99 | -> | Plus |
| arm_X | 13600181..13600359 | 439..617 | 100 | -> | Plus |
| arm_X | 13603438..13603590 | 618..771 | 99 | -> | Plus |
| arm_X | 13603862..13604103 | 772..1014 | 92 | | Plus |
