FMO06955.5prime Sequence
1135 bp (1005 high quality bases) assembled on 2008-10-01
> FMO06955.5prime
CAGTCGACATGGGTTTAACTAAACAATATTTGGCCTACCGGGCTATAGAC
AGCTTTAATATCATCACCTCCGGCCGCGCCAATGTGAACTTTGCCGTTGT
GGACAAGACAGAGGGTCGATATGTGGCCGCTCCAGCTGCTGAAAATGTGA
TCGTGTGGGATTTGCGAATGGGCGATCGCAAGCTGACGCTGCGCCGCGAA
AAGTTCGAGGTCACCTCCCTGAGGGTCTCGCCAGATCACCTGCACATTGC
CGTTGGCTATGCGGATGGCATGGTGCAGATCTTCGATCTCAGCTCGGACA
GGTACTACGATCCCATCTGTACGCTGGCACTCCACAAGAACGCTGTTAGC
ATCCTGCGGTACGATTTGCAGGGCATGCGTCTGGTGAGCGGAGGCCTGGA
CACCGAATTGGTGGTCGTCGATGTGGTGGAGCAGGCGGGAAGAGCTCGAT
TGAGTGGCCACAATGCCGCCATCACGGACGCCCATTTCCTGCAGCGTCTG
GTAGACGAGAGCATAGTGGTAAGCTGTTCGAAGGACACGCAGATCAAGTT
CTGGAACCTGGAGACGCAGTTCTGCTTCAAGACAATCGTGGATAACCGCA
CCGAAGTCTGGGCACTGGCCTTTATTGGGAATCTAATGGTAGCTGGCGCC
GGCGAAAGCGGCATGAATGTCTACCGCCTGAGAAAGCACGACGGTGCCAT
CACTGAAACTCTGGAGTCTGCAGTTGAAGGCCTGTCTATTGATGACGAGG
ACACCATCAGCCCCATTAGCGTGAGCAACTGCGGCACCATCCAGCGCGCT
GGAAAGGGCCGCACCGTCAACCTGGTGACCGATCCCAGTGAACGCGTGAT
CAGCTGCCACGGCACTAATGATCTAATCGAGACTTCTACATCTGCCCCGC
CGGGACGAGGTAAAGAAACGACTGCCTAAGCGTCTAAAGAGGAAAAAAAG
TCGCCGAAGATGAGGATCAGACGAAGCAAACTGTCCACGAACATCGCTGA
CGACGATCAGCGACTGAAAGCATCTGCCAGCAAGATCAAGTCCATGAATG
GTGTTTGGCAGACACGAGCTGCTGTCTTGGTAGTGCCAAACGTCTGGTGC
TTGTATCGCTGAGGCTCTATCAACGCCAGGACCGA
FMO06955.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:09:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8064-RA | 2901 | CG8064-RA | 75..1219 | 9..1123 | 4765 | 96.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:09:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18283955..18284771 | 166..980 | 3760 | 98.4 | Plus |
| 3R | 32079331 | 3R | 18283734..18283891 | 9..166 | 790 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:09:16 has no hits.
FMO06955.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:01 Download gff for
FMO06955.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8064-RA | 68..1046 | 1..980 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:29:53 Download gff for
FMO06955.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8064-RA | 68..1046 | 1..980 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:01:07 Download gff for
FMO06955.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8064-RA | 70..1048 | 1..980 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:01:07 Download gff for
FMO06955.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18283729..18283891 | 1..166 | 97 | -> | Plus |
| 3R | 18283956..18284771 | 167..980 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:01 Download gff for
FMO06955.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14109451..14109613 | 1..166 | 97 | -> | Plus |
| arm_3R | 14109678..14110493 | 167..980 | 98 | == | Plus |
