FMO06957.5prime Sequence
1079 bp (1004 high quality bases) assembled on 2008-10-01
> FMO06957.5prime
CAGTCGACATGAACGACCGTGAATTGGGCTGTGCGGGCGGACAGTTTATG
GATCGCGGGCGGATGAATCAGAATGGCGTTGTCCAGCCGCTGCTCACTGA
TTTGTACCAAATAACCATGGCCTATGCCTATTGGAAATCCGATAAAACCG
ATGATACGGCGGTATTCGATCTGTTCTTTCGCAACAATCCATTCCATGGG
GAATTCACCATTTTCGCCGGACTCGAGGAGTGCCTCAAATTCCTGGATAG
CTTTCACTATTCCCAGAGCGATATCGAATACCTGAAGCAAACACTGCCCG
AGGGCATTGAGCACGAGTTTTTTGAGTACCTCGGCAATCTGACGGCGCGG
GATGTCACCTTGTATGCCATTGATGAGGGCACAGTAGCATTTCCACGAGT
ACCCATCATTAAGATCGAGGGACCTTTGATCATCGTCCAGCTGCTGGAGA
CAACACTACTCACCTTGGTAAATTATGCCAGTTTGATGGCCACCAATGCA
GCCCGTTATCGCATGGTAGCTGGTAAACATGTCAAACTATTGGAATTTGG
ACTGCGTCGTGCCCAGGGACCAGATGGAGGTCTATCCGCATCGAAATACT
CCTACACAGGCGGTTTTGATGGCACCTCCAATGTGCTGGCTGGAAAATTG
TTCAACATACCCGTAAAGGGAACGCATGCCCATGCCTATATCACTAGTTT
TCAGTAGTATTGGAGAGCTGAAGACCCGTCTAATTAAGCACAAGCAGACA
GGCATCCTGGAAGATTTGCTGGAGCATGCTGTCAGGCACCGGGCATTGCT
GTCGCATCTCCTTGACGTTTCTACGGAGGAATCTAGTGAGGGGGAACTGG
CTGCGATGGTCCTCCTATGCCATCGCATTCCCTGATGGATCATGGCACTT
TGTCGATACGTACGATGTAAGAGCCGAAGAACAGACCAGGCAACACAGAA
CCAAGCATATCATGATATCAAGTCTGATACAGTCCGCCAAAGTCAAAGGC
AAGTCCTTTGACCAATGGCCATCAAATGGGCAGGGCGTTGGCCACTAGAC
GGGCCTCAGACACCCATGTTTCTTCAATT
FMO06957.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:07:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3714-RF | 2808 | CG3714-RF | 389..1429 | 9..1045 | 4835 | 98.2 | Plus |
| CG3714-RE | 3089 | CG3714-RE | 484..1524 | 9..1045 | 4835 | 98.2 | Plus |
| CG3714-RB | 2868 | CG3714-RB | 449..1489 | 9..1045 | 4835 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:07:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4195734..4195905 | 270..99 | 860 | 100 | Minus |
| 2L | 23513712 | 2L | 4193316..4193483 | 918..750 | 700 | 98.2 | Minus |
| 2L | 23513712 | 2L | 4193538..4193682 | 752..607 | 680 | 99.3 | Minus |
| 2L | 23513712 | 2L | 4194817..4194948 | 610..479 | 660 | 100 | Minus |
| 2L | 23513712 | 2L | 4195539..4195666 | 397..270 | 640 | 100 | Minus |
| 2L | 23513712 | 2L | 4196475..4196565 | 99..9 | 455 | 100 | Minus |
| 2L | 23513712 | 2L | 4195017..4195101 | 481..397 | 425 | 100 | Minus |
| 2L | 23513712 | 2L | 4192842..4192950 | 1045..941 | 270 | 91.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:07:36 has no hits.
FMO06957.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:17:07 Download gff for
FMO06957.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3714-RB | 443..1506 | 1..1061 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:34:11 Download gff for
FMO06957.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3714-RB | 440..1503 | 1..1061 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:50:47 Download gff for
FMO06957.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3714-RB | 443..1506 | 1..1061 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:50:47 Download gff for
FMO06957.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4196475..4196571 | 1..99 | 95 | | Minus |
| 2L | 4193310..4193481 | 752..923 | 97 | <- | Minus |
| 2L | 4193539..4193679 | 610..751 | 99 | <- | Minus |
| 2L | 4194818..4194945 | 482..609 | 100 | <- | Minus |
| 2L | 4195017..4195100 | 398..481 | 100 | <- | Minus |
| 2L | 4195539..4195665 | 271..397 | 100 | <- | Minus |
| 2L | 4195734..4195904 | 100..270 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:17:07 Download gff for
FMO06957.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4196475..4196571 | 1..99 | 95 | | Minus |
| arm_2L | 4193310..4193481 | 752..923 | 97 | <- | Minus |
| arm_2L | 4193539..4193679 | 610..751 | 99 | <- | Minus |
| arm_2L | 4194818..4194945 | 482..609 | 100 | <- | Minus |
| arm_2L | 4195017..4195100 | 398..481 | 100 | <- | Minus |
| arm_2L | 4195539..4195665 | 271..397 | 100 | <- | Minus |
| arm_2L | 4195734..4195904 | 100..270 | 100 | <- | Minus |
