FMO06959.5prime Sequence
593 bp (592 high quality bases) assembled on 2008-10-01
> FMO06959.5prime
CAGTCGACATGTTCTCACGACCCAGCTTATGTGGAACTGTGGGCAAATTG
TGTCGATGCGGCACTTCAGCAACAGGAAAGACTGCTGTGGCAGCAGCAAC
AGTTCCCACCGCTCGACACTATCATGAGGTGGTGGGCGATATCATCTGCC
CGTCTCAGGTGCGCGGCATAGATCACATCCGTGATCCGCGACTCAACAAG
GGCCTTGCCTTTACACTGGAGGAGCGCCAGACTCTGGGCATCCATGGGCT
GCATCCAGCGCGCTTCAAGACGCAAGAGGAGCAGCTGCAGCTATGCAAGA
TCGCCGTAAACCGCTACACGGAGCCGCTGAACAAGTATCTCTATCTGAGC
GATCTGTACGATCGCAATGAGCGTCTGTTCTTCCGCTTCCTATCGGAGAA
CATCGAGGATCTGATGCCCATTGTGTACACGCCCACGGTGGGCTTGGCCT
GCCAGCGCTTTGGCCAGATCTACCGACGTCCTCATGGTCTGTTCATCACC
TACAACGATCGAGGACACATCTTTGATGTGATGAAAAACTGGCCGGAGCC
GAATGTGCGTGCCATCTGTGTGACGGATGGTGAGCGCATCCTG
FMO06959.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:25:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Men-b-RC | 2543 | CG5889-RC | 229..813 | 9..593 | 2865 | 99.3 | Plus |
| Men-b-RB | 2239 | CG5889-RB | 229..813 | 9..593 | 2865 | 99.3 | Plus |
| Men-b-RA | 3311 | CG5889-RA | 229..813 | 9..593 | 2865 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:25:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27154454..27154848 | 199..593 | 1915 | 99 | Plus |
| 3R | 32079331 | 3R | 27154213..27154391 | 23..201 | 895 | 100 | Plus |
| 3R | 32079331 | 3R | 12714740..12714921 | 593..412 | 220 | 74.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:25:38 has no hits.
FMO06959.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:00:49 Download gff for
FMO06959.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Men-b-RA | 222..813 | 1..593 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:29:51 Download gff for
FMO06959.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mdh-RA | 243..834 | 1..593 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:01:14 Download gff for
FMO06959.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Men-b-RA | 222..813 | 1..593 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:01:14 Download gff for
FMO06959.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27154216..27154390 | 26..200 | 100 | -> | Plus |
| 3R | 27154456..27154848 | 201..593 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:00:49 Download gff for
FMO06959.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22979938..22980112 | 26..200 | 100 | -> | Plus |
| arm_3R | 22980178..22980570 | 201..593 | 98 | | Plus |
