FMO06960.5prime Sequence
717 bp (716 high quality bases) assembled on 2008-10-01
> FMO06960.5prime
CAGTCGACATGTACTACGCCGTCGATTACTACGCGGATATGGGACAAATC
TCTCAAGATTGTTTCGCTGCAACGCAAACTGGAGCATCCGACTTTGACAT
GGACGAGCTCGATGACCTGGACCAGGTGACCCAAGTGATTGGATATCATC
CCCAGTTCCACGATCACTTCCTGGCCACCCAGAACTTCATTATGAAGGGC
GATGGTCCGCTGCCTAACGATTACAGATACTACTTGGCCATAATTGCTGC
TGCCCGCCATCAGTGTCCGTATCTGGTGAAGCGCTACGAGAAGGAGTTCA
TCAACCAGGGCGGCGATAGTGCCTGGCTGGGCGGCCTGGACTTTATACCC
GCCAAACTACGTGCCATATACGATATCAATAAAATATTAGCCCATCGGCC
CTGGCTGCTGCGCAAGGAGCATATCGAGCGGCTCACCAAGGGGAAGAACA
GCTGGTCGCTGTCGGAGGTGGTGCACGCCATGGTCCTGCTCTCGCACTTC
CACTCGCTGTCCTCCTTTGTGTTCTCCTGCGGCCTCACACAAAAGCTGGA
CGGGCTGTCCAGTCCCAAGCTGAAGAGTCCGCCCGCAGCAGTGGCGGCCC
TCGCACCCACCATTCTCATCACTCCCACCTCGCCGACGGAGCCGCAGAAA
GGGAAGCCAGTGCTGGCGGAGATCTCGCTCAACAATGCTAATCCCGGATT
ACGACAGCCAGACCCGC
FMO06960.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:26:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sesn-RC | 4745 | CG11299-RC | 1053..1758 | 8..714 | 3480 | 99.6 | Plus |
| Sesn-RB | 3053 | CG11299-RB | 1024..1729 | 8..714 | 3480 | 99.6 | Plus |
| Sesn-RA | 3097 | CG11299-RA | 1068..1773 | 8..714 | 3480 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:26:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23731155..23731441 | 427..714 | 1360 | 99 | Plus |
| 2R | 25286936 | 2R | 23729049..23729235 | 60..246 | 935 | 100 | Plus |
| 2R | 25286936 | 2R | 23730909..23731091 | 246..428 | 915 | 100 | Plus |
| 2R | 25286936 | 2R | 23722824..23722875 | 8..59 | 260 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:26:49 has no hits.
FMO06960.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:01:41 Download gff for
FMO06960.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sesn-RA | 1062..1775 | 1..717 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:34:26 Download gff for
FMO06960.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11299-RC | 1045..1758 | 1..717 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:01:54 Download gff for
FMO06960.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sesn-RA | 1062..1775 | 1..717 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:01:54 Download gff for
FMO06960.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23730909..23731091 | 246..428 | 100 | -> | Plus |
| 2R | 23722818..23722875 | 1..59 | 94 | -> | Plus |
| 2R | 23729049..23729234 | 60..245 | 100 | -> | Plus |
| 2R | 23731157..23731443 | 429..717 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:01:41 Download gff for
FMO06960.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19610341..19610398 | 1..59 | 94 | -> | Plus |
| arm_2R | 19616572..19616757 | 60..245 | 100 | -> | Plus |
| arm_2R | 19618432..19618614 | 246..428 | 100 | -> | Plus |
| arm_2R | 19618680..19618966 | 429..717 | 98 | | Plus |
