Clone FMO06967 Report

Search the DGRC for FMO06967

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:69
Well:67
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG8860-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO06967.5prime Sequence

230 bp (230 high quality bases) assembled on 2008-10-01

> FMO06967.5prime
CAGTCGACATGGACAAGGTTGTCAAATTCGCCGAACCCGGACGCGCCTTC
GCCAAGGACTCAATCCGCCTGGTGAAGCGCTGCACAAAACCCGACCGCAA
GGAGTTCCAGAAAATCGCCATCGCCACCGCCGTGGGCTTCGCCATCATGG
GCTTCATCGGCTTCTTCGTCAAGCTGATTCACATTCCCATTAACAACATC
ATCGTGGGATCCGCAAGCTTTCTAGACCAT

FMO06967.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:32:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG8860-RA 420 CG8860-RA 110..313 9..212 1020 100 Plus
Sec61gamma-RC 537 CG14214-RC 26..228 6..208 700 89.7 Plus
Sec61gamma-RB 792 CG14214-RB 158..360 6..208 700 89.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:32:39
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12179590..12179793 212..9 1020 100 Minus
X 23542271 X 19643884..19644086 6..208 700 89.7 Plus
2R 25286936 2R 20512745..20512877 207..75 200 76.7 Minus
Blast to na_te.dros performed on 2014-11-28 20:32:40 has no hits.

FMO06967.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:46:07 Download gff for FMO06967.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8860-RA 110..321 9..218 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:33:46 Download gff for FMO06967.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8860-RA 46..257 9..218 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:04:55 Download gff for FMO06967.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8860-RA 110..321 9..218 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:04:55 Download gff for FMO06967.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 12179582..12179793 9..218 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:46:07 Download gff for FMO06967.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8067087..8067298 9..218 98   Minus