Clone FMO06972 Report

Search the DGRC for FMO06972

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:69
Well:72
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCdlc2-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO06972.5prime Sequence

293 bp (293 high quality bases) assembled on 2008-10-01

> FMO06972.5prime
CAGTCGACATGTCGGATCGCAAGGCGGTGATCAAGAACGCTGACATGAGC
GAGGAGATGCAGCAGGACGCTGTTGACTGCGCCACCCAGGCCCTGGAGAA
GTACAACATCGAGAAGGACATCGCCGCCTTCATCAAGAAGGAGTTCGACA
AGAAGTACAACCCCACCTGGCACTGCATCGTGGGCCGCAACTTCGGATCC
TATGTGACCCACGAGACGCGCCACTTCATCTATTTCTACCTGGGCCAGGT
GGCCATTCTGCTCTTCAAGAGCGGTGCAAGCTTTCTAGACCAT

FMO06972.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:29:28
Subject Length Description Subject Range Query Range Score Percent Strand
Cdlc2-RC 671 CG5450-RC 152..418 9..275 1335 100 Plus
Cdlc2-RB 621 CG5450-RB 102..368 9..275 1335 100 Plus
Cdlc2-RA 675 CG5450-RA 156..422 9..275 1335 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:29:26
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1344616..1344882 9..275 1335 100 Plus
X 23542271 X 4698295..4698455 115..275 430 84.5 Plus
X 23542271 X 4691737..4691845 9..117 305 85.3 Plus
Blast to na_te.dros performed on 2014-11-28 20:29:27 has no hits.

FMO06972.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:32:15 Download gff for FMO06972.5prime
Subject Subject Range Query Range Percent Splice Strand
Cdlc2-RA 147..425 1..279 97   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:34:04 Download gff for FMO06972.5prime
Subject Subject Range Query Range Percent Splice Strand
Cdlc2-RA 128..406 1..279 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:05:08 Download gff for FMO06972.5prime
Subject Subject Range Query Range Percent Splice Strand
Cdlc2-RA 147..425 1..279 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:05:08 Download gff for FMO06972.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 1344607..1344885 1..279 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:32:15 Download gff for FMO06972.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1344607..1344885 1..279 97   Plus