FMO06973.5prime Sequence
891 bp (891 high quality bases) assembled on 2008-10-01
> FMO06973.5prime
CAGTCGACATGACGACCAAGCACATCTATTCCACGACCAATTTATCAGAT
CTGCAATTAAAGGAGCAGGGAAACTGCTTGTTTGCAGCCCGAAAATATGA
CGACGCAATAAATTGCTACTCAAAGGCCATCATAAAGAACCCCACAAACG
CCACATACTTCACAAACCGAGCCCTCTGCAACCTGAAACTGAAGAGATGG
GAACTGTGCTGCCAGGATAGTCGGCGCGCCCTCGACATCGATGGGAATCT
GTTGAAGGGTCACTTCTTCCTGGGCCAAGGACTCATGGAAATCGACAACT
TTGACGAGGCTATAAAGCACCTTCAACGGGCATACGATCTGTCCAAGGAG
CAGAAGCAAAACTTTGGGGATGATATTACACTACAGTTGCGACTAGCTCG
CAAAAAGCGCTGGAATGTTATGGAGGAGAAGCGAATACAGCAGGAAATCG
AGCTGCAAAGCTATTTAAATGGTCTAATAAAAGGGGACATGGAAAGCCGT
TTGGCCAATTTAAAGCTGAATGGAAATGTACACGATGAGCAGCTGAAAGA
CAAGCAACAGGAAATTGAGCAAGAATGCGATGACCATATTAAGGAACTTA
ACAATATATTTTCTAAGGTTGACGAACGTCGAAAGAAACGTGAAGTTCCC
GATTTTCTATGTGGCAAAATAAGTTTTGAAATATTAACAGACCCTGTGAT
AACTCCATCTGGAATTACGTATGAACGAAAAGATATAGAAGAACACTTGC
AGCGGGTTGGACATTTCGATCCTGTGACACGCGTTAAGCTCACTCAGGAT
CACTAATACCAAATTTTTCATGAAGGAAGTGGTTGACTCTTTTATTGCCG
AGAATGAATGGTCTTTAGATTATGCAAGCTTTCTAGACCAT
FMO06973.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:51:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CHIP-RA | 1277 | CG5203-RA | 292..1158 | 9..873 | 4285 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:51:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10438880..10439121 | 634..873 | 1110 | 99.2 | Plus |
| 2L | 23513712 | 2L | 10438041..10438239 | 132..330 | 995 | 100 | Plus |
| 2L | 23513712 | 2L | 10438300..10438442 | 330..472 | 715 | 100 | Plus |
| 2L | 23513712 | 2L | 10437839..10437961 | 9..131 | 615 | 100 | Plus |
| 2L | 23513712 | 2L | 10438590..10438697 | 472..579 | 540 | 100 | Plus |
| 2L | 23513712 | 2L | 10438756..10438812 | 579..635 | 285 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:51:49 has no hits.
FMO06973.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:57:22 Download gff for
FMO06973.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CHIP-RA | 285..1167 | 1..884 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:33:33 Download gff for
FMO06973.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CHIP-RA | 282..1164 | 1..884 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:21:14 Download gff for
FMO06973.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CHIP-RA | 285..1167 | 1..884 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:21:14 Download gff for
FMO06973.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10437832..10437961 | 1..131 | 96 | -> | Plus |
| 2L | 10438041..10438239 | 132..330 | 100 | -> | Plus |
| 2L | 10438301..10438442 | 331..472 | 100 | -> | Plus |
| 2L | 10438591..10438696 | 473..578 | 100 | -> | Plus |
| 2L | 10438756..10438812 | 579..635 | 100 | -> | Plus |
| 2L | 10438882..10439130 | 636..884 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:57:22 Download gff for
FMO06973.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10437832..10437961 | 1..131 | 96 | -> | Plus |
| arm_2L | 10438041..10438239 | 132..330 | 100 | -> | Plus |
| arm_2L | 10438301..10438442 | 331..472 | 100 | -> | Plus |
| arm_2L | 10438591..10438696 | 473..578 | 100 | -> | Plus |
| arm_2L | 10438756..10438812 | 579..635 | 100 | -> | Plus |
| arm_2L | 10438882..10439130 | 636..884 | 97 | | Plus |
