FMO06976.5prime Sequence
1010 bp (974 high quality bases) assembled on 2008-10-01
> FMO06976.5prime
CAGTCGACATGAGCAAATTCGCTTGGGTGACGCTGACGACAAATGACACG
TACTCACTGGGTGCCTTGGTCTTGGCCCACTCACTGAAAAGGGCCAAGAC
CGCCCACCAGCTGGCCGTTCTGGTCACGCCCAATGTCTCGCAGGCGATGC
GCGACCGACTGAAGGAGGTCTACAATGTGGTGCAGGAGGTCAATGTGCTC
GACTCACAGGATGCCGCCAATCTGGCGCTCCTCTCGCGACCCGAACTAGG
CGTGACCTTCACAAAACTCCACTGCTGGCGCCTCGTTCAGTTTGAGAAGT
GCGTCTTCCTGGATGCGGACACACTGGTCTTGCAAAACTGCGATGAGCTC
TTCGAGCGCGAGGAACTGTCGGCTGCTCCGGATGTCAGCTGGCCGGATTG
CTTCAATTCCGGCGTGTTTGTGTTCAAACCTAGCGTGGACACCTTTGCCC
AGATCACAGAGTTTGCCGTGAAGAATGGCAGCTTCGATGGCGGTGACCAG
GGTCTGCTGAATCAGTTCTTTGCCGACTGGTCGACGGCGGACATTAAGAA
GCATTTGCCATTTGTGTACAATGTGACGGCTTATGCCTCGTACTGTTATC
TGCCCGCCTTCAAACAGTTCAGAGATAAGATTAAGATTTTGCATTTTGCC
GGCAAAGCTGAAGCCCTGGCTGATTCAGTTCAACTCGGGAAACAAAGGTG
GCCAGCGTTTCGTCGGAGTATGCTCATGCCCAGGATTTGATTCAGCTGTG
GTGGAACATCTTTTGCGAAAATGTCATCCCAGTCCCTGTCCACCGAAATG
GCGGGTCTGGCTGGTGCTCTGTCACAGCTACGCATCGGTCAGCAGCGCAC
TCCCGAACAAGAGGCCTACGAGACCCAGATGCGCCGGCAGTGCTGGGAGT
CTGGACAGATTGACTCCCCGGCCGCGATTCGTTTCAGAAATATCTGGAAG
AAATTATCGCAACGCTGGAAAGGAAGACCGAATAGGATTCGGAAGAAATT
GGTATCTCAC
FMO06976.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:58:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Glycogenin-RB | 2378 | CG44244-RB | 170..1168 | 9..1009 | 4640 | 97.9 | Plus |
| Glycogenin-RH | 2010 | CG44244-RH | 170..1157 | 9..998 | 4615 | 98.1 | Plus |
| Glycogenin-RI | 2404 | CG44244-RI | 203..1194 | 16..1009 | 4605 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:58:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21204613..21204925 | 16..328 | 1565 | 100 | Plus |
| 2R | 25286936 | 2R | 21205009..21205301 | 326..618 | 1465 | 100 | Plus |
| 2R | 25286936 | 2R | 21205361..21205542 | 617..801 | 775 | 98.4 | Plus |
| 2R | 25286936 | 2R | 21208469..21208679 | 800..1009 | 685 | 91.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:58:04 has no hits.
FMO06976.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:28:29 Download gff for
FMO06976.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Glycogenin-RB | 170..1168 | 9..1010 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:29:42 Download gff for
FMO06976.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Glycogenin-RB | 166..1164 | 9..1010 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:43:24 Download gff for
FMO06976.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Glycogenin-RB | 170..1168 | 9..1010 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:43:24 Download gff for
FMO06976.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21205361..21205541 | 617..800 | 98 | -> | Plus |
| 2R | 21208470..21208679 | 801..1010 | 91 | | Plus |
| 2R | 21204605..21204923 | 4..326 | 98 | -> | Plus |
| 2R | 21205010..21205299 | 327..616 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:28:29 Download gff for
FMO06976.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17092866..17093046 | 617..800 | 98 | -> | Plus |
| arm_2R | 17092110..17092428 | 4..326 | 98 | -> | Plus |
| arm_2R | 17092515..17092804 | 327..616 | 100 | -> | Plus |
| arm_2R | 17095975..17096184 | 801..1010 | 91 | | Plus |
