FMO06977.5prime Sequence
1134 bp (1010 high quality bases) assembled on 2008-10-01
> FMO06977.5prime
CAGTCGACATGCGATATGGAGCTCCGCCTACAGGAGCAAGAAGATTCCGT
GCTGCGGAGCCGGAGAAGCCGTGGTCTGGAATCCGTGATGCTTCTCGGGA
AGGTCAGAGCTGTCCGCATAAGAACATGATCCTGGACACTTTCAAGGGAG
ACGAGGATTGCCTGTTCGTCAATGTGTTCACAACCCAAATGCCCAAGGAT
GATGAGTCTGCAGAGCAGCCAAAGCTTCCTGTTATGGTTTGGCTGCATGG
AGGAGGTTTCTCCTTTGGCTCCGGCAACTCTTTCCTCTACGGACCGGACT
ATCTAGTGGCTGAGGATATTGTCTTGGTCACACTGAACTACCGACTAGGT
CCACTGGGTTTTCTTACCGCAGGACCTGACGCTCCAGGTAACCAGGGTCT
CAAGGATCAGGTACTGGCACTAAAGTGGGTGCGGGATAACATAGCCGCAT
TTGGTGGAGATCCCAATCAGGTTACCATTTTCGGAGAGTCAGCTGGAGCT
TCGTCCGTCCAGTTGCTCCTCCTGTCCTCCCAGGCCAAGGGACTTTTCCA
CCGAGCGATTTCCCAAAGTGGATCGGCCCTAAATCCATGGTCCATGTCCG
CCAGTTCGAGCCAGAGAGCTGCTCGGCTGGCAGCCAACTTGGGTTACGTG
GGGGCCAATAAAACAGAGGATATCCTCGACTTTCTTAGAAGGGTTCCAGC
CATGAAATTGGTTGAAGCCGCGCCCACAACAATCACGGCGGAGGATCAGC
GGAATAACATTGGTTTGCCATTTGTGCCCGTGGTGGAGGGATATTGGAAT
CAGACTCTCAGAGGAACAGTTCTACGAGGAGCCATTCCTTACTCAGCACC
TAGCGACATGTATCATTCGCAGAATTTTAACAGCGATGTGGCCTATATGA
CGGGTTACAATACCCCACGAGGCAATGCTGTTCATAAGAAGACTTCGCAA
GAATCCCCAGTGCTGAGCATCATGAGACGATTTTGGCCGCCTGGTTCCGC
AGATTTGATGGACTGATCTCATGATAGGTGACCGCGAATAAGATCCTTCT
ACTTGGGAAGCAGCATGTGGGCATGATCATGACGAGATGATGGCCTCCTC
ACGGATCTCATGTTCTTCAGCATCGTCCAAGTGA
FMO06977.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:07:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10175-RD | 2726 | CG10175-RD | 780..1910 | 9..1120 | 5090 | 97.9 | Plus |
| CG10175-RE | 2809 | CG10175-RE | 424..1554 | 9..1120 | 5090 | 97.9 | Plus |
| CG10175-RA | 2370 | CG10175-RA | 424..1554 | 9..1120 | 5090 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:07:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23523898..23524800 | 941..41 | 4290 | 99.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:07:32 has no hits.
FMO06977.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:17:04 Download gff for
FMO06977.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10175-RC | 510..1657 | 1..1127 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:33:28 Download gff for
FMO06977.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10175-RA | 413..1560 | 1..1127 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:50:45 Download gff for
FMO06977.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10175-RA | 417..1564 | 1..1127 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:50:45 Download gff for
FMO06977.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23523899..23524797 | 44..940 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:17:04 Download gff for
FMO06977.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19349621..19350519 | 44..940 | 99 | <- | Minus |
