FMO06978.5prime Sequence
1154 bp (1042 high quality bases) assembled on 2008-10-01
> FMO06978.5prime
CAGTCGACATGTCTTTGAAAAGTGCTCTGCACATATTTCTCCTAAGTCTG
GTTGCTCTTCAGCAACTAGAGTTGGGTACCGGTTCCCGCATCTTGGCAGC
ATTCTTTTTTCCTGGCAAGAGTCACTTCATGATGACCAATGCCATCATAC
GGGAGCTGGTGAAGCAAGGACATGAGGTTACTTTTATTACTCCGTTTTCC
TTGGCCAAGGAAAAACTTGGATCAAATTATAAGGAAATTGTGATTCCTCA
ATACGATTTTTGGCCAGAAATTAAGGAGATGACCAATAAGAACACCGTTT
TGGAAATGACAGATTTGCCAACTTTTGCATTCCTGCGAATGGTCAATGTG
ATGGGTATCCACACCACGGATTTCGCACTGGAACAACCGGAGATTCAGGC
AGTAATCAATGAGAAGAACAAAATTGGCAAATACGATCTGCTGCTGGCGG
AGCAGTTCTTCAACGAGGGTGCCCTCATCCTGGGACACTTGTACCAGATC
CCAACCATAACTATTTCGACATTTGGTAATGCCAACCACCTTAGTCAGCT
ATTTGGGGTAGTGTCTCCTTGGTCATATGTACCACACGCTTATATGCCCT
ATACGGATCGCATGACTTTGTGGGAACGCATCGGCAATGTGGCCATGAGT
GCAGCCGAGGATCTCGTCAGAGAGTTCTCCTACTACCCCGGTCAGGATGC
GGTCTTAAAGAAGCACTTCTCCAAGCTACTCGACAGAGTACCGACCATCA
AAGAACTCGAACGTAATATCTCAGCCATTCTGTTGAACAGCTACATGCCA
CTGGCATCTTCGAGACCGATGGCATATAATATGATCCCAGTGGGCGGTTT
GCACATTCAACCACCGAAGCACTACCGGAGCATCTACAAAATTCCTGGAC
GGAGCACACATGGTGCCATTTACTTTAGCTTGGGTTCCCAGGTGAGAGTG
CCGACTTGCCGCCTGAGAGCTCAAAGTATTCCTGAAGTCTTTGGCAGTCT
GAGCAACGCGTCCCTGGAAATTCGAGATGATCCCTGGCCCATTTGCGCTA
CGGTAAGGTGCAAGTTGGTACTCAGGCGCTTCTGGCCACCGATTCAAGTT
TCATGCCATGAGACTCTCGGAACCAGAAGGCGGGTACATGGTCCAATGCA
GTGC
FMO06978.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:57:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4302-RA | 1754 | CG4302-RA | 68..1142 | 9..1069 | 4960 | 98.2 | Plus |
| CG6475-RD | 1683 | CG6475-RD | 81..207 | 93..220 | 225 | 78.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:57:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21213704..21214371 | 935..271 | 3190 | 99.6 | Minus |
| 2R | 25286936 | 2R | 21214427..21214686 | 270..11 | 1300 | 100 | Minus |
| 2R | 25286936 | 2R | 21213542..21213639 | 1025..933 | 225 | 93.9 | Minus |
| 3R | 32079331 | 3R | 21399433..21399554 | 214..93 | 220 | 78.7 | Minus |
Blast to na_te.dros performed 2014-11-28 19:57:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy8 | 4955 | gypsy8 GYPSY8 4955bp | 726..808 | 117..35 | 135 | 65.5 | Minus |
FMO06978.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:20:05 Download gff for
FMO06978.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4302-RA | 60..1115 | 1..1046 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:33:25 Download gff for
FMO06978.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4302-RA | 56..1111 | 1..1046 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:44:02 Download gff for
FMO06978.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4302-RA | 60..1115 | 1..1046 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:44:02 Download gff for
FMO06978.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21213567..21213638 | 934..1002 | 95 | <- | Minus |
| 2R | 21213706..21214371 | 271..933 | 99 | <- | Minus |
| 2R | 21214427..21214695 | 1..270 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:20:05 Download gff for
FMO06978.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17101072..17101143 | 934..1002 | 95 | <- | Minus |
| arm_2R | 17101211..17101876 | 271..933 | 99 | <- | Minus |
| arm_2R | 17101932..17102200 | 1..270 | 98 | | Minus |
