Clone FMO06980 Report

Search the DGRC for FMO06980

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:69
Well:80
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG30195-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO06980.5prime Sequence

485 bp (485 high quality bases) assembled on 2008-10-01

> FMO06980.5prime
CAGTCGACATGACCGTGGACGAACCGCAGATTGTGGCCATCATTGTCAGC
CACAAGCCACAAGTGGGATACCTGAAGGAGGAGCCCACCTGGATCCGTTG
TCCTTCGTGTGAGAAGTCTGGAACCAGTTTGGTGCAACTGGAGTTGGTCA
CTTGCCTGCAGAGATTTCTGGGATTCACAAAACTTTGTAAAAAATGGTCT
GGCCGCCAGGACATCAATCACTATTGTTCACACTGCGGTTGCTTCATTGG
AAGATTTGTGCCCATCAGCTGCATGGAACGATGCATTTCGAGATCAGCCC
GTAAACAGGCGGCCGTGGATGATATGACCCTGAAGACACGACCCAAGGAT
TGCGCTGAAAGGGCCCAGAAATCCAGGGAGAAAGTTCTGGCCAGCAGGGA
GAAGAAGAGAGCAGAGAAGGCAGCCAAGGATATGGACAAATCTCAGACGC
AAATAGCAGTACACCAAGCAAGCTTTCTAGACCAT

FMO06980.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:07:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG30195-RA 575 CG30195-RA 36..495 8..467 2300 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:07:28
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22646696..22646976 467..187 1405 100 Minus
2R 25286936 2R 22647031..22647210 187..8 900 100 Minus
Blast to na_te.dros performed on 2014-11-28 23:07:29 has no hits.

FMO06980.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:17:03 Download gff for FMO06980.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30195-RA 27..498 1..471 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:33:21 Download gff for FMO06980.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30195-RA 23..494 1..471 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:50:43 Download gff for FMO06980.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30195-RA 27..498 1..471 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:50:43 Download gff for FMO06980.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 22646692..22646975 188..471 99 <- Minus
2R 22647031..22647213 1..187 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:17:03 Download gff for FMO06980.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18534197..18534480 188..471 99 <- Minus
arm_2R 18534536..18534718 1..187 97   Minus