Clone FMO06982 Report

Search the DGRC for FMO06982

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:69
Well:82
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCHORD-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO06982.5prime Sequence

1138 bp (1006 high quality bases) assembled on 2008-10-01

> FMO06982.5prime
CAGTCGACATGGAACAATGCTATAACAGAGGCTGTGGCCAACTCTTCGAT
CCGCAGACCAACAATGATGAATCTTGTCGGCACCATCCGGGTGAACCTTT
CTTCCACGACGCCTATAAGGGTTGGTCCTGCTGCAACAAGAAGTCGGTCG
ACTTCACCGAGTTCCTCAACATCAAGGGCTGCACCTTGGCAAAGCACTCG
AATGTGAAGCCACCAGAGCCGGAGAAACCTGTTAAAGATGAGTCCGACAA
GGATGAGGTAATTGAGGTGCGGGCACCCATCCGGGAAGCCCTGCCGCGTC
CGCCCATTGATTCGCCGCTAACCGTTATACAGCCCACCGTGGCTCCTGCC
CTGAAAGACATGGTTTTTGCAGTCAAAACGCCGGCTGCTCAAAAGTCCAG
CGACGCCATTGAGGTGGGAACCACTTGCAAGAATAACGGCTGCACCTACT
CCTTTACGGGTAACAGCAGCGACTTTGGCGAGTGCACCTACCATCCGGGC
GTGCCAATCTTTCACGAGGGCATGAAATTCTGGTCCTGCTGCCAGAAACG
AACCTCGGACTTTTCCCAGTTTATGGCGCAAAAGGGCTGTACCTACGGTG
AGCACAAATGGGTCAAGGAGAACGACGACAAAAAGGTTGTGCAATGTCGC
TACGACTGGCACCAGACGGCCACCAATGTGGTGATGGCCATTTATGCTAA
AAAATACGATTACAGTCAGAGCGTGATAGAGCTGAACCCCATCAGGCTGC
ACGTCAACCTGGTATTTCCCGAGCAGGACAACGCCAGGTTTGACCTGGAC
CTGGAATTGCGCGGAATTGTGAATGTGAGCAATGCAAGCGCGCATATGTA
TGGCACCAAAGTGGAGATTAAACTGCCCAAGCTGGAGCCCGGCTCTTGGT
TCAACCTAATTTCCCAACAAGAAACTGCCAGTGGTTAAGAAAGCCAGGTG
GAAGAGAAGAAAAGCAGAGGAGAGCGATGAGGAGTTCTTCGACTTGATGA
CATTAAAGCGGAAACAGTTCGTCTTTACGAATGAGCATGCAAGCCAAACA
ACTTAGATGCAAGCTTCCTAGACATTCGTTTGGGGCCGGGTCAGGAAGTG
CATATCTAATTCCTATCATATCGTAAATCCACTTAGCC

FMO06982.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:52:06
Subject Length Description Subject Range Query Range Score Percent Strand
CHORD-RA 1241 CG6198-RA 121..1183 8..1058 4975 98.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:52:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24186599..24187150 69..620 2760 100 Plus
3R 32079331 3R 24187218..24187414 619..815 985 100 Plus
3R 32079331 3R 24187473..24187675 816..1012 720 96.1 Plus
3R 32079331 3R 24186479..24186540 8..69 310 100 Plus
Blast to na_te.dros performed on 2014-11-28 20:52:06 has no hits.

FMO06982.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:57:37 Download gff for FMO06982.5prime
Subject Subject Range Query Range Percent Splice Strand
CHORD-RA 121..1186 8..1062 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:33:40 Download gff for FMO06982.5prime
Subject Subject Range Query Range Percent Splice Strand
CHORD-RA 115..1180 8..1062 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:21:24 Download gff for FMO06982.5prime
Subject Subject Range Query Range Percent Splice Strand
CHORD-RA 121..1186 8..1062 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:21:24 Download gff for FMO06982.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 24187473..24187730 816..1062 93   Plus
3R 24186479..24186540 8..69 100 -> Plus
3R 24186600..24187150 70..620 100 -> Plus
3R 24187220..24187414 621..815 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:57:37 Download gff for FMO06982.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20013195..20013452 816..1062 93   Plus
arm_3R 20012201..20012262 8..69 100 -> Plus
arm_3R 20012322..20012872 70..620 100 -> Plus
arm_3R 20012942..20013136 621..815 100 -> Plus