FMO06982.5prime Sequence
1138 bp (1006 high quality bases) assembled on 2008-10-01
> FMO06982.5prime
CAGTCGACATGGAACAATGCTATAACAGAGGCTGTGGCCAACTCTTCGAT
CCGCAGACCAACAATGATGAATCTTGTCGGCACCATCCGGGTGAACCTTT
CTTCCACGACGCCTATAAGGGTTGGTCCTGCTGCAACAAGAAGTCGGTCG
ACTTCACCGAGTTCCTCAACATCAAGGGCTGCACCTTGGCAAAGCACTCG
AATGTGAAGCCACCAGAGCCGGAGAAACCTGTTAAAGATGAGTCCGACAA
GGATGAGGTAATTGAGGTGCGGGCACCCATCCGGGAAGCCCTGCCGCGTC
CGCCCATTGATTCGCCGCTAACCGTTATACAGCCCACCGTGGCTCCTGCC
CTGAAAGACATGGTTTTTGCAGTCAAAACGCCGGCTGCTCAAAAGTCCAG
CGACGCCATTGAGGTGGGAACCACTTGCAAGAATAACGGCTGCACCTACT
CCTTTACGGGTAACAGCAGCGACTTTGGCGAGTGCACCTACCATCCGGGC
GTGCCAATCTTTCACGAGGGCATGAAATTCTGGTCCTGCTGCCAGAAACG
AACCTCGGACTTTTCCCAGTTTATGGCGCAAAAGGGCTGTACCTACGGTG
AGCACAAATGGGTCAAGGAGAACGACGACAAAAAGGTTGTGCAATGTCGC
TACGACTGGCACCAGACGGCCACCAATGTGGTGATGGCCATTTATGCTAA
AAAATACGATTACAGTCAGAGCGTGATAGAGCTGAACCCCATCAGGCTGC
ACGTCAACCTGGTATTTCCCGAGCAGGACAACGCCAGGTTTGACCTGGAC
CTGGAATTGCGCGGAATTGTGAATGTGAGCAATGCAAGCGCGCATATGTA
TGGCACCAAAGTGGAGATTAAACTGCCCAAGCTGGAGCCCGGCTCTTGGT
TCAACCTAATTTCCCAACAAGAAACTGCCAGTGGTTAAGAAAGCCAGGTG
GAAGAGAAGAAAAGCAGAGGAGAGCGATGAGGAGTTCTTCGACTTGATGA
CATTAAAGCGGAAACAGTTCGTCTTTACGAATGAGCATGCAAGCCAAACA
ACTTAGATGCAAGCTTCCTAGACATTCGTTTGGGGCCGGGTCAGGAAGTG
CATATCTAATTCCTATCATATCGTAAATCCACTTAGCC
FMO06982.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:52:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CHORD-RA | 1241 | CG6198-RA | 121..1183 | 8..1058 | 4975 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:52:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24186599..24187150 | 69..620 | 2760 | 100 | Plus |
3R | 32079331 | 3R | 24187218..24187414 | 619..815 | 985 | 100 | Plus |
3R | 32079331 | 3R | 24187473..24187675 | 816..1012 | 720 | 96.1 | Plus |
3R | 32079331 | 3R | 24186479..24186540 | 8..69 | 310 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:52:06 has no hits.
FMO06982.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:57:37 Download gff for
FMO06982.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CHORD-RA | 121..1186 | 8..1062 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:33:40 Download gff for
FMO06982.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CHORD-RA | 115..1180 | 8..1062 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:21:24 Download gff for
FMO06982.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CHORD-RA | 121..1186 | 8..1062 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:21:24 Download gff for
FMO06982.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24187473..24187730 | 816..1062 | 93 | | Plus |
3R | 24186479..24186540 | 8..69 | 100 | -> | Plus |
3R | 24186600..24187150 | 70..620 | 100 | -> | Plus |
3R | 24187220..24187414 | 621..815 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:57:37 Download gff for
FMO06982.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20013195..20013452 | 816..1062 | 93 | | Plus |
arm_3R | 20012201..20012262 | 8..69 | 100 | -> | Plus |
arm_3R | 20012322..20012872 | 70..620 | 100 | -> | Plus |
arm_3R | 20012942..20013136 | 621..815 | 100 | -> | Plus |