FMO06983.5prime Sequence
1031 bp (937 high quality bases) assembled on 2008-10-01
> FMO06983.5prime
CAGTCGACATGAAATTCCTGGTTGTTGCCTTTGCCGTTCTGGCCTGCGCC
TATGGTGATGTCTCCCATTTGGGTTACGACTACTCTCCTCCGGCCCCAGC
TCCGGTTTACCAGCCCGCCCCGGCTCCGGTCTACCAGCCCGCCCCCGCTC
CGGTCTACCAGCCTGCTCCAGCACCAGTTGTGATCCCTGCTCCTGCTCCA
GCTCCAGTTGTGATCCCTGCTCCTGCTCCCGCTCCAGTTGTGATTCCGGC
TCCAGCTCCCGTGAAGACGTACGTCCCACCCGCACCCATCAGCATCCCAG
CCCCAGTTTACCAGCCAGCTCCTGCTCCCATTAGGATCCCAGCCCCAGTT
TACCAGCCAGCTCCTGCTCCCATCAGCATCCCAGCTCCGGCTCCAATTGA
GATCCCTGCCCCAGCTCCAGTGAACACCTACATTCCCCCCGCACCAGCAC
CAGCTCCGGTTTACCAGCCAGCCCCTGCTCCCATTCCCGTGAGCATCCCG
GCTCCAGCTCCCGTTTACCAGCCTGCTCCCGCTCCCGTTGTGATCCCAGC
CCCTGCTCCAGCACCAGTTGTGATCCCTGCTCCTGCTCCCGCTCCAGTTG
TGATCCCAGCCCCAGCTCCCGTTAAGTCCTATGTGCCACCTGCACCAATC
AGCATCCCAGCCCCGGCTCCCGTTTACCAGCCAGCTCCCATCAGCATCCC
GGCCCCTGCCCCAGTTTACCAACCAGCTCCCGCTCCCGTCTACCAGCCAA
CCAAACACTCATGTTCTGGAGGAGATCGAGCCCGCTTCCATGATGGATAC
CGCTACAGACCGTGCGTCCGTCGCGTCTACCGTCACCGTTTCGCAAGCTT
TCTAACCATTCGTTTGCCGCGCGGGCCCAGGCAGTGGTCATAATCTAATC
ATAATCTAATCATAATCACACTACCTAAGAGATCCTGGTCTTGACTAGTG
CTTCGAGTTCTCCCATAAAAACTCCCGCGGAAACGTACGTTTTAATAAAA
TCCGAATGGAGTCTGAAGGCAATATTGATCT
FMO06983.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:26:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10953-RB | 1489 | CG10953-RB | 188..1022 | 8..842 | 4070 | 99.4 | Plus |
| CG10953-RA | 974 | CG10953-RA | 50..884 | 8..842 | 4070 | 99.4 | Plus |
| CG10953-RB | 1489 | CG10953-RB | 276..551 | 450..737 | 595 | 82 | Plus |
| CG10953-RB | 1489 | CG10953-RB | 630..917 | 96..371 | 595 | 82 | Plus |
| CG10953-RA | 974 | CG10953-RA | 138..413 | 450..737 | 595 | 82 | Plus |
| CG10953-RA | 974 | CG10953-RA | 492..779 | 96..371 | 595 | 82 | Plus |
| CG10953-RB | 1489 | CG10953-RB | 687..801 | 123..231 | 300 | 85.2 | Plus |
| CG10953-RB | 1489 | CG10953-RB | 303..411 | 507..621 | 300 | 85.2 | Plus |
| CG10953-RA | 974 | CG10953-RA | 165..273 | 507..621 | 300 | 85.2 | Plus |
| CG10953-RA | 974 | CG10953-RA | 549..663 | 123..231 | 300 | 85.2 | Plus |
| CG10953-RB | 1489 | CG10953-RB | 372..441 | 522..591 | 215 | 87.1 | Plus |
| CG10953-RB | 1489 | CG10953-RB | 702..771 | 192..261 | 215 | 87.1 | Plus |
| CG10953-RA | 974 | CG10953-RA | 564..633 | 192..261 | 215 | 87.1 | Plus |
| CG10953-RA | 974 | CG10953-RA | 234..303 | 522..591 | 215 | 87.1 | Plus |
| CG10953-RB | 1489 | CG10953-RB | 405..512 | 384..485 | 205 | 80.6 | Plus |
| CG10953-RB | 1489 | CG10953-RB | 564..665 | 225..332 | 205 | 80.6 | Plus |
| CG10953-RA | 974 | CG10953-RA | 267..374 | 384..485 | 205 | 80.6 | Plus |
| CG10953-RA | 974 | CG10953-RA | 426..527 | 225..332 | 205 | 80.6 | Plus |
| CG30457-RA | 646 | CG30457-RA | 185..235 | 407..457 | 195 | 92.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:26:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17165551..17166382 | 842..11 | 3955 | 99.4 | Minus |
| 2R | 25286936 | 2R | 17165656..17165886 | 371..147 | 535 | 83.1 | Minus |
| 2R | 25286936 | 2R | 17166022..17166246 | 737..507 | 535 | 83.1 | Minus |
| 2R | 25286936 | 2R | 17166132..17166276 | 231..93 | 325 | 84.8 | Minus |
| 2R | 25286936 | 2R | 17166162..17166300 | 261..117 | 325 | 84.8 | Minus |
| 2R | 25286936 | 2R | 17165772..17165841 | 231..162 | 290 | 94.3 | Minus |
| 2R | 25286936 | 2R | 17166162..17166231 | 621..552 | 290 | 94.3 | Minus |
| 2R | 25286936 | 2R | 17166008..17166066 | 343..285 | 235 | 93.2 | Minus |
| 2R | 25286936 | 2R | 17166050..17166108 | 385..327 | 235 | 93.2 | Minus |
| 2R | 25286936 | 2R | 17165802..17165871 | 261..192 | 215 | 87.1 | Minus |
| 2R | 25286936 | 2R | 17166132..17166201 | 591..522 | 215 | 87.1 | Minus |
| 2R | 25286936 | 2R | 17165772..17165841 | 591..522 | 200 | 85.7 | Minus |
| 2R | 25286936 | 2R | 17165802..17165871 | 621..552 | 200 | 85.7 | Minus |
| 2R | 25286936 | 2R | 17160533..17160583 | 457..407 | 195 | 92.2 | Minus |
Blast to na_te.dros performed 2014-11-28 23:26:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2777..2852 | 241..163 | 127 | 64.6 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2777..2852 | 601..523 | 109 | 62 | Minus |
FMO06983.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:01:26 Download gff for
FMO06983.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10953-RA | 43..896 | 1..855 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:33:37 Download gff for
FMO06983.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10953-RA | 39..892 | 1..855 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:01:45 Download gff for
FMO06983.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10953-RA | 43..896 | 1..855 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:01:45 Download gff for
FMO06983.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17165551..17166384 | 8..842 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:01:26 Download gff for
FMO06983.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13053056..13053889 | 8..842 | 99 | | Minus |
