FMO06991.5prime Sequence
1158 bp (1018 high quality bases) assembled on 2008-10-01
> FMO06991.5prime
CAGTCGACATGTTTGGCCATCTCAGTTTGCTGGCCGCTCTGTTTTTCATC
GGCACATTGAAAGATTTCCGCGTTGCTGGGCTGAGACTGACCGAGGTTCG
CATTCCGATGTACGTGATTAAGGGTACCGCGGCGCAGTTGGAGTGTCTTT
ACGATCTGGATGGCGAGGCCCTCTACTCCGTGAAATGGTACAAGGATGGC
AACGAGTTCTACCGCTATGTGCCGAGGGATATGCCGCCTGCCCAAACGTT
CCTGCTGCCTGGTGTTAACGTCGATTTACACAACTCGAGCGACGCGATTG
TTACGCTGCGCAACGTCAATCTGCAGTCGGCGGGCCGCTTCCGGTGCGAA
GTTTCTGGTGAGGCACCCTCCTTCCAAACGGTCACCGAGCACGGCGACAT
GATTGTTGCGTATCTTCCGGACGAAGGATCACCGAAAATCAGCGGTGGAC
GACCGCGTTACCAAATCGGAGACTATGTTCGGGTTAATTGCACCGCAGGA
CGTTCCAAGCCTGCTGTGAAACTATCCTGGCAAGTGAATGGAGAGCCAGT
TGAGCAGCAGAAACTCCGCAAATACGACACAATTGTATCGGGACGAGATG
GTCTAGAAACTTCTGTGCTGGGCCTTCAATTCCGGGTGGAACAGAAACAC
TTTCGCAAAGGCAACATGAAACTAAAGTGCATAGCCGAATTGTCGACCGT
GTACTGGAGGTGCAACGAGGAGTCCGTGGAGGGCGACCGGCCGCAGAAAG
CGCCGGTGCTCGAGTCCCGGGAAACGGTCTACGCCAGCAACTCACGCGCC
GATCCCGTCCAAGGTACGTCTTACCGGGAATTATTTGTGACCAAAATCTT
ATCGCTCTTGTTCGTCCAACCAAAATGCAGCCAGTTCCACGGCTTCAGCG
CCCTCCACACCAATCACGCCCACTCGTCCTCCTTCCGTGCGCTGGCGTGA
TGGTGATGGCAACCCTGGCGCAGCATTCACGAGAGATATAGAAAAAGATA
AAATATTCCATGGATCGGACGCGCCTGTAGGATTGGGATACGAAAGAACT
CAGCAGGCAAGAATGCTGCTGGCCGCAGGAAGAAATCGCAAGACAGTCAC
GCAATCCGCACGCCACCTGAAAATGCATGACTGCACGGCAACCTTCTACA
CTCGTTTG
FMO06991.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:43:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| beat-IIIc-RA | 1709 | CG15138-RA | 436..1542 | 7..1101 | 4960 | 97.5 | Plus |
| beat-IIIc-RB | 3836 | CG15138-RB | 436..1242 | 7..813 | 4005 | 99.8 | Plus |
| beat-IIIc-RB | 3836 | CG15138-RB | 1241..1476 | 879..1101 | 655 | 89.5 | Plus |
| beat-IIIb-RD | 3249 | CG33179-RD | 1254..1510 | 152..408 | 310 | 74.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:43:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 17190032..17190434 | 1073..676 | 1350 | 94.6 | Minus |
| 2L | 23513712 | 2L | 17190834..17191099 | 677..412 | 1330 | 100 | Minus |
| 2L | 23513712 | 2L | 17196875..17197088 | 275..62 | 1070 | 100 | Minus |
| 2L | 23513712 | 2L | 17193525..17193660 | 411..276 | 680 | 100 | Minus |
| 2L | 23513712 | 2L | 17251509..17251565 | 63..7 | 270 | 98.2 | Minus |
| 2L | 23513712 | 2L | 16984695..16984781 | 152..238 | 240 | 85.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:43:53 has no hits.
FMO06991.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:54:42 Download gff for
FMO06991.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| beat-IIIc-RA | 430..1515 | 1..1077 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:21:47 Download gff for
FMO06991.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| beat-IIIc-RA | 428..1513 | 1..1077 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:17:14 Download gff for
FMO06991.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| beat-IIIc-RA | 430..1515 | 1..1077 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:17:14 Download gff for
FMO06991.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 17196875..17197086 | 64..275 | 100 | <- | Minus |
| 2L | 17251509..17251571 | 1..63 | 95 | | Minus |
| 2L | 17190024..17190432 | 678..1077 | 94 | <- | Minus |
| 2L | 17190834..17191099 | 412..677 | 100 | <- | Minus |
| 2L | 17193525..17193660 | 276..411 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:54:42 Download gff for
FMO06991.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 17193525..17193660 | 276..411 | 100 | <- | Minus |
| arm_2L | 17196875..17197086 | 64..275 | 100 | <- | Minus |
| arm_2L | 17190834..17191099 | 412..677 | 100 | <- | Minus |
| arm_2L | 17190024..17190432 | 678..1077 | 94 | <- | Minus |
| arm_2L | 17251509..17251571 | 1..63 | 95 | | Minus |
