FMO06992.5prime Sequence
1130 bp (945 high quality bases) assembled on 2008-10-01
> FMO06992.5prime
CAGTCGACATGACGGAGCTAAGGGACGAGACACCGCTCTTTCACAAGGGC
GAGATAGTCCTTTGCTACGAGCCGGATAAATCGAAGGCCCGTGTTCTTTA
CACCAGCAAGGTGCTAAACGTCTTTGAGCGCCGGAACGAGCATGGCCTGA
GGTTCTACGAGTACAAGATTCACTTCCAGGGCTGGCGTCCATCCTACGAT
CGCTGTGTGCGCGCCACCGTTCTATTGAAAGACACCGAGGAGAATCGCCA
GTTGCAAAGGGAGCTGGCCGAAGCTGCCAAGCTGCAAATTCGTGGTGACT
ACTCCTACAAGGGCACACCCGATAAGCCATCGGCCAAGAAGAAACGCGGC
GGAAAAGCGGCCCACGTTGAGGAGCCAATAGTGGTTCCAATGGACACGGG
ACATCTTGAGGCGGAGCACGAAATGGCGCCCACTCCACGAGCAGCGGGCA
ACCGGACGCGGGACAACAGCGGTGGCAAGCGAAAGGAAAAACCCCCGTCC
GGAGATGGCCGATTAAAGGGAAACCGGGGCAGACAAACAGAGACCTTTTA
TAACAATGCCATAAATGATGTATCGGTCTATAACCATGTGCCACAGGAGG
ATCGCATTATGATGCGAGTCAGCGAGCGATTGCGAGAGCTTATAGAGTAC
GATCGGAATATGATCAAGGTACTAGGCAAACAGCACGCACTGCCCGCCCG
CGTGCCCATCGTGACCATCATGGAAAACTTCGTCAAGCAGCAGGCCGTGG
AGCTAGCCATTAGCATTAAACAGGACAGCTCGAGGGCCAGGAACACGCAG
AGTCGCAATGCCAGAATGGAGCGGGAATACGATCGCGTTATGTCCACTGT
CTGCATGCTGAAGGAGGGGGTAAAGGATTGCGGTATCTACTTTGGAGTTC
CACGTGGATGACCACTTGCTGTAACGAAAGAGAAGGAGTTTGTCACCAAC
TACCTTCACAGAACGACACATGCGCAACTGCAGCTAATTTTGAACAGTCT
AACTAATTTTTCATTCCCATCGTGAACCGGAACTGATCGGCCTGAACGGC
CCCCTTGGTAGAAGGTCCGCGACCCAAGGGACAAATTCGGAATTTATATA
TTCGGCGTCTGAGATTCAGAGAAACACGTT
FMO06992.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:07:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| msl-3-RA | 1970 | CG8631-RA | 112..1172 | 9..1065 | 4695 | 96.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:07:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7124401..7124958 | 847..290 | 2790 | 100 | Minus |
| 3L | 28110227 | 3L | 7125025..7125205 | 289..109 | 905 | 100 | Minus |
| 3L | 28110227 | 3L | 7125319..7125422 | 112..9 | 520 | 100 | Minus |
| 3L | 28110227 | 3L | 7124207..7124342 | 984..848 | 270 | 84.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:07:26 has no hits.
FMO06992.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:17:01 Download gff for
FMO06992.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| msl-3-RA | 106..1155 | 1..1050 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:32:58 Download gff for
FMO06992.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| msl-3-RA | 96..1145 | 1..1050 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:50:42 Download gff for
FMO06992.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| msl-3-RA | 106..1155 | 1..1050 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:50:42 Download gff for
FMO06992.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7124401..7124958 | 290..847 | 100 | <- | Minus |
| 3L | 7125025..7125203 | 111..289 | 100 | <- | Minus |
| 3L | 7125321..7125426 | 1..110 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:17:01 Download gff for
FMO06992.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7117501..7118058 | 290..847 | 100 | <- | Minus |
| arm_3L | 7118125..7118303 | 111..289 | 100 | <- | Minus |
| arm_3L | 7118421..7118526 | 1..110 | 96 | | Minus |
