FMO06993.5prime Sequence
1148 bp (1014 high quality bases) assembled on 2008-10-01
> FMO06993.5prime
CAGTCGACATGTGGAACCACCCAAGCCAGCGCTGGCTCATCTTGATCTGC
GTTATATGTTTGCTGTCTTTTGCGCTGGCCAATTCGCTTCATGGCTATGC
TAATGCTGAAGGTCATCCAGTGGAGATTTCGGCCACATTGCCAGGCCAGC
TGAAGTTTGTGCATGTCATATATCGCCACGGCGACAGAACGCCCGTGGAT
CCCTATCCCACGGACCCCTGGGGCGACAGGAAGTTCTGGCCCACCGGCTG
GGGAGATTTGACCAATTTGGGCAAGCAAGAGCACTACGACCTGGGAAAAT
GGCTGCGGAATCGCTATTCAAACCTCCTACCGCCTATATACTCCAACGAG
AACATCTACGTTCAGTCCACCGACGTGGATCGCACATTGATGAGTGCCCA
GTCGAATCTGGCTGGTCTCTACGAGCCGCAAGGGGAAGACATCTGGAACA
CGGACATCAACTGGCAACCCATACCCATTCACACCTCGCCCGAGAGGGAG
GATCCCATACTGGCCGCTAAGGCACCTTGTCCTGCCTATGACTATGAGCT
GGCCAGCCTGGAATCATCGCCAGAATTCAAGGCCTTGACCGAAAAACACC
GAAATCTGTTTGCTTATTTGAGCGAAAAAGGCGGACGCCCCGTGAAGACC
TTCATTGATGCCCAGTATTTGAATAACACCTTGTTCATTGAGAATCTGTA
CAACATGACACTGCCCAAAATGGACTAAAATGGTTTATGGGAGAGAGGAG
CTCACGTATGTATCGAATTTCGCTTTCGCCATCAGCTCTTATACGCGAAA
GCTGGCGAGACTGAGGGCGGGGCCTTTGCTAAAGGACATATTCCAGCGGT
TTAAAGAGAAATCCTCCGGGGAGCCTAAAACCAGATCGTTCGATGTGGGT
CTACAGTGCTCATGACACCACGGTAGCCAGCGTTTTGAATGCGCTGAAAT
ATTTGAGCTGCACAGTCCTCCCTACACGGCGGGCATAATGATGGAGTGGG
TTGTGATGAGACCAACACCCGTTGGTCTCTATATTTTCTACAGAACCACA
CAGCTGAACCCTTGCCCTCGGGACTTACTGGATGGTGGGCTTCTGGTCCG
CTGACGAACTATATGAACATCTCACAGGACGTTTTGCCGTGAAATTGG
FMO06993.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:52:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Acph-1-RA | 1944 | CG7899-RA | 188..1317 | 9..1138 | 5090 | 97.4 | Plus |
| Acph-1-RB | 1889 | CG7899-RB | 133..1262 | 9..1138 | 5090 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:52:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29992091..29992772 | 950..267 | 3305 | 99.6 | Minus |
| 3R | 32079331 | 3R | 29992986..29993144 | 167..9 | 795 | 100 | Minus |
| 3R | 32079331 | 3R | 29992829..29992927 | 266..168 | 495 | 100 | Minus |
| 3R | 32079331 | 3R | 29991831..29992014 | 1138..956 | 295 | 82.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:52:04 has no hits.
FMO06993.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:55 Download gff for
FMO06993.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Acph-1-RB | 127..1185 | 1..1061 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:32:55 Download gff for
FMO06993.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Acph-1-RA | 179..1237 | 1..1061 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:22:30 Download gff for
FMO06993.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Acph-1-RB | 127..1185 | 1..1061 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:22:30 Download gff for
FMO06993.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29992083..29992772 | 267..957 | 99 | <- | Minus |
| 3R | 29992829..29992927 | 168..266 | 100 | <- | Minus |
| 3R | 29992986..29993150 | 1..167 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:55 Download gff for
FMO06993.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25817805..25818494 | 267..957 | 99 | <- | Minus |
| arm_3R | 25818551..25818649 | 168..266 | 100 | <- | Minus |
| arm_3R | 25818708..25818872 | 1..167 | 97 | | Minus |
