FMO06995.5prime Sequence
1114 bp (1021 high quality bases) assembled on 2008-10-01
> FMO06995.5prime
CAGTCGACATGTTATTCTTGAGACGATTTTACAGCAAATCCGGACGGATA
GCTCAAATATTAAAGACTAATAAGCCAGGCGACTCTTTGGCCATACAGGG
ATGGATCAAAAACGTTCGCCGGTTGAAGAACAACACATTTCTGGACATCA
ATGATGGTTCCACGAGCAGTAGGTTCCAGGTGGTCGTGCCCCGGACTCCG
GAAAACCAGCACTTGGCTCCGGGAAGCGTCATTGCAGCTGTCGGTAAAAT
TCAAGTGGCTCCAAATGGCAGCTTCGAGTTGCATGCGAATCAGGTGGAAA
TGTTGGCTGAAGGACGGCTGCAGGAGGGTTATCCCTTCAGTCCCAAACAG
AAACATCCACCGGAATATGTACGTGAGCATCTACATCTTCGATCACGCGT
AGATTTCGTTGCCGCCCAGATGAGGGTCAGACACAAAGCACAAAAAGCTA
TACACGACTACATGGATGATCAGGATTTCGTGCAGATCAACACTCCTCTG
CTCACAACCAACGATTGCGAGGGAGCAGGAGAAGTGTTTCGGGTACAACC
GGACTCCCAAGACCTGCTCAAGCAGATGAACCGACCAAATATTCCCATGG
AACAAAGCTACTTTGATAGCAAAGTATTCCTCAGCGTCTCTGGTCAACTG
CACCTGGAGGCCATGACATACGGTTTAGGCAAGACATACACTCTCTCACC
AGCCTTCCGAGCGGAGAACTCCAAGTCTCCGTTGCATTTAGCAGAGTTCT
ATATGTTTGAAGCGGAACTTGCCCATTTGGAGGAGATGGAGAAGTTAGCG
CAGTTCATTGAACAGATGCTGAAATCTGTGACAAACCGTTTGCTGGAAAC
GAGTGGCGAGGACCTAAGTTTCTGTCACGGAATTCAACTCTAACTCCGAT
CTCCCTTGGCTGCAAGTACCGTGAGATATGAGCTACGACGAGCCCTGCAA
GTACTGCAAGAAAACAGGACAGTCTTAGACTCTATAGCTGAACGAGGATT
CTCCAAGGACAAGAACTTTTTTAATGCCCATGTGGTGCTCCCGTATCGTT
GTGGAATTGCAGCTCAGACAGATCTTTTACATGAGTCTCGCGTTCCAATT
CAATCGAGTTCAGC
FMO06995.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:21:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6796-RA | 1482 | CG6796-RA | 39..1165 | 9..1112 | 4930 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:21:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17002453..17003131 | 306..977 | 3050 | 98.7 | Plus |
| 2R | 25286936 | 2R | 17002181..17002390 | 97..306 | 1050 | 100 | Plus |
| 2R | 25286936 | 2R | 17002032..17002122 | 9..99 | 455 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:21:09 has no hits.
FMO06995.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:44:31 Download gff for
FMO06995.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6796-RA | 39..1168 | 9..1114 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:33:13 Download gff for
FMO06995.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6796-RA | 19..1148 | 9..1114 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:03:11 Download gff for
FMO06995.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6796-RA | 39..1168 | 9..1114 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:03:11 Download gff for
FMO06995.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17002032..17002121 | 9..98 | 100 | -> | Plus |
| 2R | 17002183..17002390 | 99..306 | 100 | -> | Plus |
| 2R | 17002454..17003285 | 307..1114 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:44:31 Download gff for
FMO06995.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12889537..12889626 | 9..98 | 100 | -> | Plus |
| arm_2R | 12889688..12889895 | 99..306 | 100 | -> | Plus |
| arm_2R | 12889959..12890790 | 307..1114 | 95 | | Plus |
