FMO06996.5prime Sequence
997 bp (968 high quality bases) assembled on 2008-10-01
> FMO06996.5prime
CAGTCGACATGGGCCAAGTCGAGGCGCGCACTGTGCTGTGGTACATGACA
TTCATCGGTTTCATCGTGAACTACATGATCCGGATCAATCTGAACATTAC
CATTGTGGACATGATTGCCGGGAAGGGTGCTATTACCTCAAATGAAACCC
ACGAGAACTCTACGGACTTGGCTGCCCTTGCGGAAATGAATGAACGATTT
TCGCTGGAGCGTTGGTTTTTGGACTGGGCGAATATTCCGTACGAAAAGAA
TGGATTTCACTGGAACGAGAAGCAGCAGGGCGCTCTGTTGGGATCATTTT
TCTGGGCCCACTGGACACTGCAGATTCCCGGCGGCATCTTGGCCACCAAA
TATGGTACTAAACTGGTGTTTGGTTGGTCCAATGGCATCGGTGTGTTCTG
CTGTTTCCTTATACCAATCGTATCGTACTGGAGCTACACGGGCTTGATTA
TCCTGCGAGTATTCCAGGGGTGGATAACGGGCTTGGCCTGGCCATCGATG
CACGTGCTCACTGCCAAATGGATTCCGCCCAACGAGCGCAGCAAGTTTGT
CAGTGCTTACTTGGGCAGTTCTGTGGGCGTGGCCCTGTTCTATCCGATCT
TCGGCTACATCATCGATTGGACACGGTGGGAGTGGGTCTACTATATCTGC
GGAATCGTGGGCACTCTCTGGTTCATCGCCTGGCAGTTCCTTGTGTTCGA
TAGTCCCGCTGAGCATCCCCGCATCGCTGACTCGGAGAGAAAGTTCATCG
AGAAGTCCTTGGGTGCCTCCATTCAGGGCAGCAAGGGACCCACACCCTGG
AAAGCGATTGCCACCTCTCGTCCGTTTGGCTGATGTGGTCGCCCAATGGG
GTGGCATCTGGGGTCTCTTCACTTTGATGACCCATGCGCCGACTTACTTC
AGACTGAATCACCACTGCGAACATTCGAGCGACTGCTTCTGTCCGGACTG
CCGACATCTTATGAGAATGCTCTTCCCCTACCTCCTCTCCATATCCC
FMO06996.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:50:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NaPi-T-RB | 1918 | CG10207-RB | 103..1091 | 8..994 | 4730 | 98.9 | Plus |
| NaPi-T-RA | 2660 | CG10207-RA | 437..1425 | 8..994 | 4730 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:50:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14844213..14844670 | 931..475 | 2100 | 98.7 | Minus |
| 2R | 25286936 | 2R | 14844719..14844965 | 480..234 | 1235 | 100 | Minus |
| 2R | 25286936 | 2R | 14845082..14845298 | 233..17 | 1085 | 100 | Minus |
| 2R | 25286936 | 2R | 14844090..14844144 | 994..939 | 185 | 92.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:50:42 has no hits.
FMO06996.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:56:32 Download gff for
FMO06996.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NaPi-T-RA | 430..1427 | 1..997 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:29:28 Download gff for
FMO06996.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NaPi-T-RA | 430..1427 | 1..997 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:20:34 Download gff for
FMO06996.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NaPi-T-RA | 430..1427 | 1..997 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:20:34 Download gff for
FMO06996.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14844213..14844665 | 480..931 | 98 | <- | Minus |
| 2R | 14844720..14844965 | 234..479 | 100 | <- | Minus |
| 2R | 14845082..14845298 | 17..233 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:56:32 Download gff for
FMO06996.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10731718..10732170 | 480..931 | 98 | <- | Minus |
| arm_2R | 10732225..10732470 | 234..479 | 100 | <- | Minus |
| arm_2R | 10732587..10732803 | 17..233 | 100 | | Minus |
