Clone FMO07001 Report

Search the DGRC for FMO07001

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:70
Well:1
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG14044-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO07001.5prime Sequence

1147 bp (929 high quality bases) assembled on 2008-10-03

> FMO07001.5prime
CAGTCGACATGGGCTGTGGCTCCTCCATGGATACGCAGACGAATCCTGTC
GTCACGGAGGTCAGCTCGGAAATGCAACCTCGCCAGAATGGCGCCTCTGG
AAATGTGGTCGAGCAATATGTGCGCCTGGACGAGCAGATCAGCAAGCTGG
AGGGCACATGTCCTGGTCCTCGAATGGCCACCGCCGAGGCCTGGGTGGAG
CACATTCAGAGCAAGCACGAGGCGATGCTGGGACTCGATGGCATGGGAGT
GTCTCCTTTGCGCGAGAGGGAATGGGAAACCGAGGAGGCCCTGCCCATTC
CAGCTTACACAATGGGGGGGCGGCAGGGCGACCCAATTGTGGCCAACACG
CCCACCAAGGACCTGGCCCAGCTTGCCTACAACCTGGGCGTAATTGGCGA
TGCCCGCAAGGCTTCCATGCACGAGGATTTCTTCGCCAACCTGAGCGAGT
CCGCCATGTATTTGCTTAGCATTCGTTACTACGGCGAGATGTTGGAACAC
ACTAAGGTGCGTCTAAAGACTCTGGCCGAGAGCTATGCAGAGCTGAACGA
GCTGTACGTAAAGCAAGACGGGATTATAGCGTATATAAGCGGGGGAACGT
ACATGACTCGGCTGGAGGAGAGCATTGATGAGCAGCTTGAGACGGCAAGA
GATACAAGGGATAAGCTGGGCAGCGCACTGGAGCAGTGGCGCATCTGTGG
ATTACTACTTAGAGCAGCCGCGAATTCCTCGACGCAGGCATTAAAACAAT
GGCGACAGCTTGGACGGGATAATAGATCCCAAGCAAAAGCTTCAGTGGGA
CGTTGAACTGTCTAAGTCTGTTACACGCCTCCACGATATCCCCTAAAGGC
GGCTCAGCTGGGCTCTGCCGCACGTGGAACTGAGTACATGAGTCATCGGC
AAGTCCTAGCCGTCAGCACTGCAACACTACCTAATCATGGAAATAGCCAA
AAAGCGCGGTACGAAGCCAACCAGTCGGGTCTTCCACCAGTTACGATCCA
AACTGTCCAAAAACTGGACGGTGGCTCCTCCAAACCTTTAACAGCCGCCT
GCGCCCAAACCTACAAAAGGGGCGGAAGAAACTTGTATGCGCGCTTGGCC
CAAAAGCCCTTCCGGATCTATTCCGAGAGAAGTCCTTCAAACACAGG

FMO07001.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:47:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG14044-RA 1318 CG14044-RA 111..1192 9..1095 4725 96.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:47:38
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4943346..4943743 370..767 1990 100 Plus
2L 23513712 2L 4943011..4943280 102..371 1350 100 Plus
2L 23513712 2L 4943803..4943991 774..961 505 92.7 Plus
2L 23513712 2L 4942852..4942944 9..101 465 100 Plus
Blast to na_te.dros performed on 2014-11-28 20:47:38 has no hits.

FMO07001.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:40:02 Download gff for FMO07001.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14044-RA 106..1170 1..1071 96   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:36:00 Download gff for FMO07001.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14044-RA 100..1164 1..1071 96   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:29:19 Download gff for FMO07001.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14044-RA 106..1170 1..1071 96   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:29:19 Download gff for FMO07001.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 4942847..4942944 1..101 96 -> Plus
2L 4943011..4943280 102..371 100 -> Plus
2L 4943348..4943748 372..773 99 -> Plus
2L 4943803..4943988 774..958 92 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:40:02 Download gff for FMO07001.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4942847..4942944 1..101 96 -> Plus
arm_2L 4943011..4943280 102..371 100 -> Plus
arm_2L 4943348..4943748 372..773 99 -> Plus
arm_2L 4943803..4943988 774..958 92 -> Plus