Clone FMO07003 Report

Search the DGRC for FMO07003

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:70
Well:3
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG7465-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO07003.5prime Sequence

1004 bp (991 high quality bases) assembled on 2008-10-03

> FMO07003.5prime
CAGTCGACATGAAACTCTTCCTGGTCGCTTTTGCCGTGATCGCAGCCGTG
GCTGCCGATGTCAGCCACCTGCCCTCCAACGAGTACCTGCCTCCCGTCCA
GGAGCAGCAGATCATCGCCGGACCCAGCAACGAGTACCTGCCTCCCGTGC
AGGCCGAGTCTGCCCCCGCCCATGAGCTGGCCGATGATGGCTACCGGTAC
AAGACCCACAAGCGCGTGGTGGTCCGCCGCCACCGCCGTGACGTCAACGA
GCTCTTCAACGAGTACCTGCCCCCCTTCGCAGCTCCTTCCAACGAGTACC
TGGCTCCTGCTGAGGGTGCTCCTGAGACCATCTTGGCCGATGATGGATAC
CGTTACAAGACCCACAAGCGCGTGGTAACCCGCCGTCACCGTCGTGATGT
GAGCCACTTGCCCTCCAACGAGTACCTGCCCCCAGTCCAGGCTGCTGCTC
CTTCCAACGAGTATCTGCCCCCAGTGTCCGCCCCCGTCCAGGTTGCTGCC
CCAGCTCCCGCTCCAGTTCAGATCGCCGCCCCTGTCCAGCTGGCCGCCCC
CGCTCCTGTCGTGGTTGAGGCTGAGCCCGCCCATGAGCTGGCCGATGACG
GTTACCGTTACAAGACCCATCGTCGCGTTGTTTACCGCCGCCACCGCCGT
GACGTCAACGAGCTCTCCAACGAGTACCTGCCCCCCTTCGCAGCTCCTTC
CAACGAGTACCTGGCTCCCGCTGAGACTGCTCCTGAGACCGACTTGGCCG
TTGATGGATACCGCTACAAGACCCACAAGCGCGTGGTAACCCGCCGTCAC
CGTCGTGATGTGAACGAGCTCTCCAACGAGTACTTGCCTCCCGTGCAGTC
TGCTCCCTCTGCCGAGTACCTTGCCCCCAGGAAAACACGGTCGAGGCGGC
TCCCGCCCATGTCCTGACTGATGATGGAAACGTCTACCAGACCCACCAGC
GCCGTTGTGTGCCGCCGCCACCCCAGCTTTCTAGACCCATTCGTTTGGCC
GCGC

FMO07003.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:38:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG7465-RA 1126 CG7465-RA 49..1011 9..971 4665 99.1 Plus
CG7465-RA 1126 CG7465-RA 205..486 576..854 950 89.4 Plus
CG7465-RA 1126 CG7465-RA 616..894 165..446 950 89.4 Plus
CG11350-RC 1497 CG11350-RC 924..1017 342..435 335 90.4 Plus
CG7465-RA 1126 CG7465-RA 218..315 745..842 295 86.7 Plus
CG7465-RA 1126 CG7465-RA 785..882 178..275 295 86.7 Plus
CG7465-RA 1126 CG7465-RA 218..342 334..467 260 80.6 Plus
CG7465-RA 1126 CG7465-RA 374..507 178..302 260 80.6 Plus
CG11350-RC 1497 CG11350-RC 924..1015 753..841 260 87 Plus
CG7465-RA 1126 CG7465-RA 785..882 589..686 220 81.6 Plus
CG7465-RA 1126 CG7465-RA 629..726 745..842 220 81.6 Plus
CG11350-RC 1497 CG11350-RC 615..720 327..441 210 80 Plus
CG7465-RA 1126 CG7465-RA 374..507 589..713 200 77.6 Plus
CG7465-RA 1126 CG7465-RA 629..753 334..467 200 77.6 Plus
CG7465-RA 1126 CG7465-RA 933..1011 155..233 200 83.5 Plus
CG11350-RC 1497 CG11350-RC 630..684 753..807 200 90.9 Plus
CG11350-RC 1497 CG11350-RC 924..1012 186..271 200 83.1 Plus
CG11350-RC 1497 CG11350-RC 63..134 39..109 185 84.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:38:29
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4480412..4481372 11..971 4605 99.1 Plus
3L 28110227 3L 4480566..4480847 576..854 925 89.4 Plus
3L 28110227 3L 4480977..4481255 165..446 925 89.4 Plus
3L 28110227 3L 4483797..4483890 342..435 335 90.4 Plus
3L 28110227 3L 4480579..4480676 745..842 295 86.7 Plus
3L 28110227 3L 4481146..4481243 178..275 295 86.7 Plus
3L 28110227 3L 4483797..4483857 753..813 245 93.4 Plus
3L 28110227 3L 4480735..4480834 178..274 225 84 Plus
3L 28110227 3L 4480579..4480675 334..433 225 84 Plus
3L 28110227 3L 4480990..4481087 745..842 220 81.6 Plus
3L 28110227 3L 4481146..4481243 589..686 220 81.6 Plus
3L 28110227 3L 4481294..4481372 155..233 200 83.5 Plus
3L 28110227 3L 4483488..4483557 327..396 200 85.7 Plus
3L 28110227 3L 4483503..4483557 753..807 200 90.9 Plus
3L 28110227 3L 4483797..4483852 186..241 190 89.3 Plus
Blast to na_te.dros performed on 2014-11-28 21:38:30 has no hits.

FMO07003.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:34:16 Download gff for FMO07003.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7465-RA 41..1011 1..971 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:36:02 Download gff for FMO07003.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7465-RA 42..1012 1..971 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:36:29 Download gff for FMO07003.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7465-RA 41..1011 1..971 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:36:29 Download gff for FMO07003.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 4480404..4481372 1..971 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:34:16 Download gff for FMO07003.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4480404..4481372 1..971 98   Plus