Clone FMO07004 Report

Search the DGRC for FMO07004

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:70
Well:4
Vector:pMK33-CFH-BD
Associated Gene/Transcriptpxb-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO07004.5prime Sequence

314 bp (314 high quality bases) assembled on 2008-10-03

> FMO07004.5prime
CAGTCGACATGTGGAAAATGCTGGATATGATGGAACTGTCCGAAGCAGAG
CTCTTCATGTTCGACTGCGACGATTGCTCGGGCACGCCCCTTGCCCCACC
GCCCCAGTTCCTCATCCCACCGCCACCAAGACCGCCGGCCCTGGCCGAAT
TCACGGTGGTGCCGCAGGATTGCAACGAGGAGCAATTGGCCCAGCAGCAA
TGGGAGAGCGATGTCTGCCAGGCAATGCCGGTAAGTGGGAAAATCTACCC
AAAATATGATAAGCCCATTATAAAAACTCGAAAAATTCTCCAATATGCAA
GCTTTCTAGACCAT

FMO07004.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:30:24
Subject Length Description Subject Range Query Range Score Percent Strand
pxb-RC 5086 CG33207-RC 599..820 9..230 1110 100 Plus
pxb-RB 3024 CG33207-RB 599..820 9..230 1110 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:30:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15671959..15672246 9..296 1440 100 Plus
Blast to na_te.dros performed on 2014-11-28 20:30:23 has no hits.

FMO07004.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:32:37 Download gff for FMO07004.5prime
Subject Subject Range Query Range Percent Splice Strand
pxb-RB 593..827 1..238 96   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:36:03 Download gff for FMO07004.5prime
Subject Subject Range Query Range Percent Splice Strand
pxb-RA 590..897 1..308 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:05:46 Download gff for FMO07004.5prime
Subject Subject Range Query Range Percent Splice Strand
pxb-RB 593..827 1..238 96   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:05:46 Download gff for FMO07004.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 15671953..15672260 1..308 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:32:37 Download gff for FMO07004.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11497675..11497982 1..308 97   Plus