FMO07005.5prime Sequence
348 bp (348 high quality bases) assembled on 2008-10-03
> FMO07005.5prime
CCTTATACGAAGTTATCAGTCGACATGTCGAACAAAATTGAAGTCTCGCT
TCCGGAGGAGGAACTGGATTGGATACAATTGCGCCAGGACCTGGGACCCG
TTGCCGAGGTGGAAACGACCAAGGAGAAGTTGCAGCGCAAGATCAAGGAG
AATCCGCTGGTTCCGTTGGGATGTTTGGCCACTACAGCGGCGCTCACAGC
TGGCTTATACAACTTTCGCACTGGCAATCGCAAGATGTCGCAGCTGATGA
AGCAAAGTCGTATCGCGGCTCAGGGATTTACCGTTATGGCCCTAGTTGTC
GGCGTCGTCATGACCTACACTGATAAAAAAGCAAGCTTTCTAGACCAT
FMO07005.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:38:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9921-RC | 985 | CG9921-RC | 392..701 | 21..330 | 1505 | 99 | Plus |
| CG9921-RB | 685 | CG9921-RB | 92..401 | 21..330 | 1505 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:38:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16331565..16331726 | 330..169 | 780 | 98.8 | Minus |
| X | 23542271 | X | 16331808..16331957 | 170..21 | 735 | 99.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:38:34 has no hits.
FMO07005.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:34:18 Download gff for
FMO07005.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9921-RB | 86..406 | 14..337 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:36:03 Download gff for
FMO07005.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9921-RA | 186..506 | 14..337 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:36:30 Download gff for
FMO07005.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9921-RB | 86..406 | 14..337 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:36:30 Download gff for
FMO07005.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16331809..16331963 | 14..169 | 97 | | Minus |
| X | 16331560..16331725 | 170..337 | 97 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:34:18 Download gff for
FMO07005.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16225593..16225758 | 170..337 | 97 | <- | Minus |
| arm_X | 16225842..16225996 | 14..169 | 97 | | Minus |
