FMO07006.5prime Sequence
479 bp (479 high quality bases) assembled on 2008-10-03
> FMO07006.5prime
CAGTCGACATGAACTCCCTTCACGCCCACCTCCTACTGCTGGCAGTTTGC
TGCGTCGGCTACATCGCCAGCTCCCCGGTAATTGGCCAGGATCAGCGCAG
CGGAGACAGCGATGCCGATGTCCTGCTGGCCGCCGACGAGATGGCCGACA
ACGGTGGCGACAACATCGACAAGCGGGTGGAGCGGTACGCCTTCGGTCTG
GGACGACGGGCCTATATGTACACGAACGGCGGACCGGGCATGAAGCGCCT
GCCGGTCTATAACTTCGGTCTGGGCAAGAGGTCTCGTCCCTACTCCTTCG
GACTGGGCAAACGCAGCGACTACGACTACGACCAGGACAACGAGATCGAC
TACAGAGTGCCGCCAGCGAACTACTTGGCAGCCGAGCGTGCTGTGCGACC
TGGCCGACAGAACAAGCGAACGACGCGTCCGCAACCCTTCAACTTTGGCC
TGGGCCGACGTGCAAGCTTTCTAGACCAT
FMO07006.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:33:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| AstA-RB | 1054 | CG13633-RB | 273..725 | 9..461 | 2265 | 100 | Plus |
| AstA-RA | 1459 | CG13633-RA | 276..728 | 9..461 | 2265 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:33:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24761390..24761774 | 393..9 | 1925 | 100 | Minus |
| 3R | 32079331 | 3R | 24761261..24761333 | 461..389 | 350 | 98.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:33:06 has no hits.
FMO07006.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:46:22 Download gff for
FMO07006.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ast-RA | 269..732 | 1..466 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:36:04 Download gff for
FMO07006.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ast-RA | 256..719 | 1..466 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:05:10 Download gff for
FMO07006.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AstA-RA | 269..732 | 1..466 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:05:10 Download gff for
FMO07006.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24761257..24761328 | 394..466 | 97 | <- | Minus |
| 3R | 24761390..24761781 | 1..393 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:46:22 Download gff for
FMO07006.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20586979..20587050 | 394..466 | 97 | <- | Minus |
| arm_3R | 20587112..20587503 | 1..393 | 99 | | Minus |
