FMO07008.5prime Sequence
1146 bp (974 high quality bases) assembled on 2008-10-03
> FMO07008.5prime
CAGTCGACATGACACTTCTTGGGCCTAGCGCCCCAGGCATGGCCTTTATG
ATGAAAAAGAAGAAGTACAAGTTCAACGTTGAAGTGCAGCTGCAGGATTT
GGTAGAGGTGGCCCTGGTCAATGAGGTGCTGTTCGCAAAGATACGGTTGC
TCGATGGAGGTTCCTTTCAGGAGTACAGTAGTCGCGAGGAAGTGCGCAAC
CATCGAGTAGAATGGAACCGCAGCTTTGAGTTTCCTTGCAAGATGAGCGC
GAATGCTTCAACCGGCGTTTTAGATCCTTGCCATCTGCGTATATCAATAC
GCAAAGAAATGAAGGGCGGACGAAGTTACTATAAGCTTGGTTTTATCGAC
CTCAATCTGGCCGAATTCGCCGGCGCCGGCCTCACCTCCCGTCGGTTTCT
CCTGGAGGGCTATGACTCAAGACACCGCCTAGACAACTCGATGTTGCGTG
TGAGCATTAAGATGCATATGCTTAGCGGTGACATTCTGTTCAAAGCACCC
ACGCCAAATCTAAAAAGCAAGCAGAGCAAGCCTTCAATAGATGATTTTTC
AAATGCAGCCACTGGAGTCGGCCTGCAAATTCCAACGGCTACCGCATTGC
CCAGTATAGGTGGCGGAAGCGGTGGCGCATCCGTTTCCTTGGGCGGTAGT
GGAGTCACTTTGGGCGGCATCCCCGGTAATCAGTCGTTACCCGGAACCCG
ACCCCTTTCCACCACAAAGGAGGAGGATATCGATAACCAGGCTTTGATAG
CAGCTATTGTGACAGACTCCGGCTTGTCGCAGTCCTCGGAATCGGGGGTA
ACGTTGACTACGGATAATCTCCAGCAGCATGGCTCAGTCGTCGTAGCTAA
TCCTATTAGTCCTGTGACGCAGCGCTACCGCAACTGGGAATCATTGGCAG
CAACAATTACTGATACAAACGAGGGCTTATCGGAATTACTGGCCGCCGGC
AACGCCACCCTCATAGGAAATGGGTTCATTCAAGAAAGTCCAGTATACTA
GTCCAATTGTCAAAAGGTTCCGGGTTACAGTAGTTTTTCCGCCAGTCAAC
AATTCCAGGCCAAAGTTCTGAAGTGGATCCGGACATTGCTAGGATCCCAG
CCTCCGTCGTTAGTTATTATGAAAACGAATCTCCTAATCGGACGAA
FMO07008.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:30:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8671-RB | 2431 | CG8671-RB | 505..1640 | 9..1146 | 4930 | 96.5 | Plus |
| CG8671-RF | 3739 | CG8671-RF | 580..1637 | 9..1071 | 4860 | 97.8 | Plus |
| CG8671-RE | 4183 | CG8671-RE | 580..1637 | 9..1071 | 4860 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:30:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 21273827..21274139 | 184..496 | 1565 | 100 | Plus |
| 2L | 23513712 | 2L | 21274200..21274429 | 497..726 | 1135 | 99.6 | Plus |
| 2L | 23513712 | 2L | 21275378..21275645 | 726..995 | 990 | 94.5 | Plus |
| 2L | 23513712 | 2L | 21273596..21273771 | 9..184 | 880 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:30:28 has no hits.
FMO07008.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:32:39 Download gff for
FMO07008.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8671-RB | 505..1627 | 9..1133 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:36:06 Download gff for
FMO07008.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8671-RB | 500..1622 | 9..1133 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:05:50 Download gff for
FMO07008.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8671-RB | 505..1627 | 9..1133 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:05:50 Download gff for
FMO07008.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 21273596..21273771 | 9..184 | 100 | -> | Plus |
| 2L | 21273828..21274139 | 185..496 | 100 | -> | Plus |
| 2L | 21274200..21274429 | 497..726 | 99 | -> | Plus |
| 2L | 21275379..21275656 | 727..1006 | 94 | -> | Plus |
| 2L | 21275724..21275755 | 1007..1039 | 93 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:32:39 Download gff for
FMO07008.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 21273596..21273771 | 9..184 | 100 | -> | Plus |
| arm_2L | 21273828..21274139 | 185..496 | 100 | -> | Plus |
| arm_2L | 21274200..21274429 | 497..726 | 99 | -> | Plus |
| arm_2L | 21275379..21275656 | 727..1006 | 94 | -> | Plus |
| arm_2L | 21275724..21275755 | 1007..1039 | 93 | == | Plus |
