Clone FMO07011 Report

Search the DGRC for FMO07011

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:70
Well:11
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG7016-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO07011.5prime Sequence

1123 bp (999 high quality bases) assembled on 2008-10-03

> FMO07011.5prime
CAGTCGACATGACGCGATCTTCGCCAGCTTGGTGTGCTGGCCAGGCCTGG
CTCGTCTGGCTTTTGGCATCCATCTGGATACGCACGTGTCTCGCGCAATT
TGCAGTCTCCTCGTCCTCCGCCGGCGGAGCTGTTGCCTCCGCCGGTGGCG
TCACTGTGGTGGCCCAGCTGCCCGGTTTCGGAGTTATCAATGGACTGATC
AATGCCATGCACAACAACAACCGCTTCAACCAGCAGCCGCAGTTCGAGAG
ACTGCAGCAAGGAAGGCCGGGGATGGGTCCGAATCGAGGAGGAATGCACA
GACCAGGATTTGCACCACCCAACCGTCAGCAACCGACGCCTCCTGGCTGG
CCACCCGGCTGGCAGTGGGGAGCCGGTGGAAATCAGAATCAACCCGGATT
TGACTGGGTTCAAACAGGATTTGCACCAGGCTGGAATGGAGGTGGAGGGC
AAGGACCAGGATGGAATGGTCCAGGATGGAACGGAGGCGGTGGAAGAGGA
CCTCCACCAAGACCAGGTTTTAACGGCGGCGGACCACCGCCGCCAAGACC
AGGATGGAACGGCGGCGGGCCACCACCACCGATGCCAGGCTGGAATGGAG
GAGGGCCACCGCCACCAAGGCCAGGATGGAATGGCGGAGGACCTCCGCCA
CCAAGGCCAGGCTGGAATGGAGGGATGGAACAGGAATGGGATAACTATCC
ACGCCTCCCCGATCAGCCGGATCCCAATGATCCAAACACGAATTGGAATC
CAGATAATGAGTCTAGCACCACTCCACAAACGCCAATACCAGGACCCATC
TTTCCAACGACAACACCTAAGCCAGAGCCCACCTTTCCCACGATCCAGCC
ACGTCCAACGCTCAGGCAACGAAGATACGCTCATATACGAACCAATCGAC
CGCCGTTGGTGCCGCCCATAATCCGGATCCACCCACGCCCACTTTCCCAC
TTGGATCGTGCCGGAGCCATGCAAACCATTGGACGAACTCCTCCGAAAAT
CGTGCTATTTAATTCCCAGCTCTTAGCAACTATATCCATTTTGCCAACCT
GGGAGTTCCTCAATTCCATTGAATGTGAGAACGAAAAAGCAGCTTCTAGA
ACATTCCTGGCGCGCGGCCAGGT

FMO07011.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:23:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG7016-RA 1286 CG7016-RA 49..1147 7..1098 4910 97.3 Plus
CG7016-RA 1286 CG7016-RA 542..676 536..670 330 83 Plus
CG7016-RA 1286 CG7016-RA 578..712 500..634 330 83 Plus
CG7016-RA 1286 CG7016-RA 542..643 572..673 210 80.4 Plus
CG7016-RA 1286 CG7016-RA 614..715 500..601 210 80.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:23:33
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24862979..24864018 7..1039 4630 97.9 Plus
3R 32079331 3R 24863472..24863606 536..670 330 83 Plus
3R 32079331 3R 24863508..24863642 500..634 330 83 Plus
3R 32079331 3R 24863472..24863573 572..673 210 80.4 Plus
3R 32079331 3R 24863544..24863645 500..601 210 80.4 Plus
Blast to na_te.dros performed on 2014-11-28 22:23:34 has no hits.

FMO07011.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:01:37 Download gff for FMO07011.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7016-RA 42..1095 1..1047 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:35:57 Download gff for FMO07011.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7016-RA 41..1094 1..1047 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:13:09 Download gff for FMO07011.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7016-RA 42..1095 1..1047 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:13:09 Download gff for FMO07011.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 24862972..24864010 1..1031 98 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:01:37 Download gff for FMO07011.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20688694..20689732 1..1031 98 -> Plus