FMO07012.5prime Sequence
959 bp (-76 high quality bases) assembled on 2008-10-03
> FMO07012.5prime
CAGTCGACATGAAGCCAAAGCAGAAGAATTCCGTAGAGCCGCTATTGCTA
GTCGCAATTCTCATCGGAGTTCTGGTAGCCGCCACCCACGCTCAAGATCA
GAAATCGGTGAAACCATCGGCGGCAGCGCCATCAGCAGCAGCTTCTCGGC
CCCATGATGAAATCTATATCGACGATGATAGCATCGAGGGATCCGGCGGA
CGCGGCGGTATACACGAAGATCTAGAGAAAGATCCGGACTATTCTGGCTC
CGGCTTTGGACCCGATGACGAGGACGCCGAACCCGATCAGCATTCGCACA
GTTCGCACAACACGCGCATCTCGCAGAGCAGCAACTCCGGCATAAACACG
GGCGCAGGTGGCAGCAACGTGCACGAATTGGACCCCAATACGAACGTGAA
TAGCCAGCCCTCCGACACAAAGGGCATCGATCACAGGCCCAACGGCAACG
AAGTGGTCATCATGAGCGAGGACGATCGCACGTCGAGCTTCTTCTTGCAG
CCCGGAATTCTGGCTGCTGTCATTGGCGGTGCCGTCGTTGGGCCTGCTCT
GCGCCATACTCGTGGTCATGTTCATCGTGTACCGCATGAGGAAAAAGGAC
GAGGGATCCTATGCGCTGGGACGAGCCAAGAGATCGCCGGCCAACAATTC
GAATGCGAAGAATGCGAATAACCGCGAGTTTCTACGACGCAAGCTTTCTA
GACCATTCGTTTGGCGCGCGGGCCATAGTAAGTGGTCATAATCATTCTCA
TAATCTTAATCATTTTCATTATCTTTCCTAGGATATCCTGGTTCTGACTA
GGTGCTTGGATTCTCCCCATTAAAAACGGCGCGGGAGGCAACTGAGTCGT
TCTGAACTAATCATGATTGGATTTCCGATGGTTATTATTGATTTTATCAA
TAGTAGTCCAGGCGACGCTTGAAATTCTATTACGCCCCGGTCTTGTCCTT
CATCCAATT
FMO07012.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:24:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sdc-RB | 1985 | CG10497-RB | 359..1034 | 9..686 | 3220 | 98.7 | Plus |
| Sdc-RG | 2944 | CG10497-RG | 195..778 | 101..686 | 2775 | 98.6 | Plus |
| Sdc-RD | 1869 | CG10497-RD | 337..677 | 9..349 | 1690 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:24:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21394878..21395045 | 516..349 | 810 | 98.8 | Minus |
| 2R | 25286936 | 2R | 21399175..21399313 | 348..210 | 695 | 100 | Minus |
| 2R | 25286936 | 2R | 21394573..21394736 | 680..516 | 650 | 97 | Minus |
| 2R | 25286936 | 2R | 21412311..21412421 | 209..99 | 555 | 100 | Minus |
| 2R | 25286936 | 2R | 21480091..21480183 | 101..9 | 450 | 98.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:24:07 has no hits.
FMO07012.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:01:47 Download gff for
FMO07012.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sdc-RB | 359..1034 | 9..686 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:21:13 Download gff for
FMO07012.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sdc-RB | 351..1026 | 9..686 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:13:26 Download gff for
FMO07012.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sdc-RB | 359..1034 | 9..686 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:13:26 Download gff for
FMO07012.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21394568..21394735 | 517..686 | 96 | <- | Minus |
| 2R | 21394878..21395045 | 349..516 | 98 | <- | Minus |
| 2R | 21399175..21399313 | 210..348 | 100 | <- | Minus |
| 2R | 21412311..21412418 | 102..209 | 100 | <- | Minus |
| 2R | 21480091..21480183 | 9..101 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:01:47 Download gff for
FMO07012.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17282073..17282240 | 517..686 | 96 | <- | Minus |
| arm_2R | 17282383..17282550 | 349..516 | 98 | <- | Minus |
| arm_2R | 17286680..17286818 | 210..348 | 100 | <- | Minus |
| arm_2R | 17299816..17299923 | 102..209 | 100 | <- | Minus |
| arm_2R | 17367596..17367688 | 9..101 | 98 | | Minus |
