FMO07013.5prime Sequence
662 bp (662 high quality bases) assembled on 2008-10-03
> FMO07013.5prime
CAGTCGACATGAAATTAATGGTTGTCCTGTTCGCCCTGATGGGCATTACC
TTGGCCAGACCGGGATACGACGGAGCAGCAACCGCCCAGTGGGGTTTGAG
ATCCGTTCCACAGAGCGGACAAAGTGGATACGGCAGCTCGCCAAGCGGAT
ACGGCGGATCAGCTTCCCAGAGCGGGCAAGGAGGATACGGTGGCGGGCAG
GGAGGATACGGTGGCGGGCAAGGAGGATACGGTGGCGGGCAGGGAGGATA
CGGTGGCGGGCAAGGAGGATACGGTGGCGTTCAGGGTGGATATGGCCAAC
CCGCTCCATTGACTGAACAGGTGGGATACGGCGGCACTCAGGGTGGATAC
GGCAGTGCACAGAAAGGATATGGCGCATCCGTGCCCCCAAATGAATTCGC
ACTTGGACTCTCGGGCCAAGGACGTTTGGGAGGATATGGCAATGCCACTC
CTCAGAGTGGAAAGTTGGGATACGGCGGCGGACAGGGAGGCTACCGAAGA
CCAGCTCCCCAATCGGGCCAGTTATATGCCGCAGGAGAGCTCGGAGCAGG
CCCCCAACTTGTACAGGGAGAATTCTCCGGCGGAATTGGTCACGAGAACT
GTAACCACGAGCATCACAAGCATCATGGACATCATGGACGTTACGCAAGC
TTTCTAGACCAT
FMO07013.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:15:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8160-RA | 1072 | CG8160-RA | 28..663 | 9..644 | 3180 | 100 | Plus |
| CG8160-RA | 1072 | CG8160-RA | 191..269 | 214..292 | 350 | 96.2 | Plus |
| CG8160-RA | 1072 | CG8160-RA | 233..311 | 172..250 | 350 | 96.2 | Plus |
| CG8160-RA | 1072 | CG8160-RA | 191..248 | 235..292 | 200 | 89.7 | Plus |
| CG8160-RA | 1072 | CG8160-RA | 254..311 | 172..229 | 200 | 89.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:15:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15327552..15328176 | 644..20 | 3125 | 100 | Minus |
| 2R | 25286936 | 2R | 15327904..15327982 | 250..172 | 350 | 96.2 | Minus |
| 2R | 25286936 | 2R | 15327946..15328024 | 292..214 | 350 | 96.2 | Minus |
| 2R | 25286936 | 2R | 15327904..15327961 | 229..172 | 200 | 89.7 | Minus |
| 2R | 25286936 | 2R | 15327967..15328024 | 292..235 | 200 | 89.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:15:55 has no hits.
FMO07013.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:59:23 Download gff for
FMO07013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8160-RA | 21..666 | 1..648 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:36:22 Download gff for
FMO07013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8160-RA | 15..660 | 1..648 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:09:37 Download gff for
FMO07013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8160-RA | 21..666 | 1..648 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:09:37 Download gff for
FMO07013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15327548..15328179 | 15..648 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:59:23 Download gff for
FMO07013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11215053..11215684 | 15..648 | 99 | | Minus |
