Clone FMO07017 Report

Search the DGRC for FMO07017

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:70
Well:17
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCsl4-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO07017.5prime Sequence

638 bp (638 high quality bases) assembled on 2008-10-03

> FMO07017.5prime
CAGTCGACATGAGTGAACAGCAGGATGAGACTGTAGTCTGCCTGCCCGGG
GAGCGACTCTGCAGAACCGAGGACAGCATAGTCCTGGGCATAGGCACCTA
CGAGCAGAATGGCTACATTTACGCCTCCAAGTCTGGAATTGTCAACATCG
AAGATTCGGGTGATAAATGCCAGGTGGTTAGTGTGCATAAGCCCGGATTT
CATCTAACCATCCCAGCCACCGGAGACGTGGTCACAGCCAGAGTTCTCGT
CACAACTCCAAAATTCGCCAAGTGCGCCATTTTCTGCGTACGAAATGTGC
TGCTGGAAAGCAGCTACCGCGGACTTCTGCGCAAGGAGGATGTCCGGGAG
ACCGAAAAAGATCGCGTCGATATCTACAAGTCCTTCCGGCCGGGCGATGT
CATCCTGGCGAGGGTCATTAACCAACTGGAGCAGTCCTTCCTCCTGACCA
CCGCCGAAAATGAACTCGGCGTGGTCATCGCCTATGCCAGTGATTACCGG
AAGACCCGGGTGCCCATGGTGCCGGTCGGCTGGAGCGAGATGCAGTGCCC
CCAGACCACGATCAAGGAGCCACGGAAAGTGGCTAAAGTTCTGCCTGAGA
GTTCAATAAATGCTGTGAAAGCAAGCTTTCTAGACCAT

FMO07017.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:24:35
Subject Length Description Subject Range Query Range Score Percent Strand
Csl4-RA 940 CG6249-RA 98..709 9..620 3060 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:24:33
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11122805..11123257 620..168 2265 100 Minus
2L 23513712 2L 11123312..11123470 167..9 795 100 Minus
Blast to na_te.dros performed on 2014-11-28 22:24:34 has no hits.

FMO07017.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:01:55 Download gff for FMO07017.5prime
Subject Subject Range Query Range Percent Splice Strand
Csl4-RA 105..720 9..625 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:36:25 Download gff for FMO07017.5prime
Subject Subject Range Query Range Percent Splice Strand
Csl4-RA 263..878 9..625 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:13:43 Download gff for FMO07017.5prime
Subject Subject Range Query Range Percent Splice Strand
Csl4-RA 98..713 9..625 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:13:43 Download gff for FMO07017.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 11122801..11123257 168..625 99 <- Minus
2L 11123312..11123470 9..167 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:01:55 Download gff for FMO07017.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11122801..11123257 168..625 99 <- Minus
arm_2L 11123312..11123470 9..167 100   Minus