Clone FMO07019 Report

Search the DGRC for FMO07019

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:70
Well:19
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG9894-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO07019.5prime Sequence

482 bp (482 high quality bases) assembled on 2008-10-03

> FMO07019.5prime
CAGTCGACATGTCGGCTGCTACGGAACAACAGAACAACGGCGATGTGGCC
GTGGAGAAGGTGGCGGCAGATGATGTGTCTGCTGTCAAGGACGATCTCAA
GGCGAAGGCGGCCGCCGAGGATAAGGCCGCTGCTGCCGATGCCGCCGGCG
ACGCGGCCGACAACGGTACGTCAAAGGACGGCGAGGATGCCGCCGATGCC
GCCGCCGCTGCCCCCGCAAAGGAATCCGTGAAAGGCACCAAGAGGCCAGC
AGAAGCCAAATCCGCAGAATCAAAGAAGGCCAAGAAGGCCGCGGCCGCCG
ATGGAGATTCCGATGAGGAAGAGGCTCTGGAGGAAATCATCGAGGGCGAC
AGTGAAATCGAGAGCGACGAGTACGACATCCCCTACGATGGTGAGGAGGA
TGACATTGAATGTGATGATGATGATGATGATAATGATGACGGTTCCGGCT
CGGACGATCAGGCGGCAAGCTTTCTAGACCAT

FMO07019.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:11:47
Subject Length Description Subject Range Query Range Score Percent Strand
Bacc-RD 2524 CG9894-RD 440..895 9..464 2280 100 Plus
Bacc-RC 2221 CG9894-RC 82..537 9..464 2280 100 Plus
Bacc-RA 1010 CG9894-RA 183..638 9..464 2280 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:11:45
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2753415..2753661 9..255 1235 100 Plus
2L 23513712 2L 2756008..2756174 255..421 820 99.4 Plus
2L 23513712 2L 2756244..2756291 417..464 240 100 Plus
Blast to na_te.dros performed 2014-11-28 19:11:46
Subject Length Description Subject Range Query Range Score Percent Strand
Rt1c 5443 Rt1c RT1C 5443bp 1161..1230 210..275 106 65.7 Plus

FMO07019.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:55 Download gff for FMO07019.5prime
Subject Subject Range Query Range Percent Splice Strand
Bacc-RA 183..641 9..468 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:36:27 Download gff for FMO07019.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9894-RA 182..640 9..468 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:02:35 Download gff for FMO07019.5prime
Subject Subject Range Query Range Percent Splice Strand
Bacc-RA 183..641 9..468 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:02:35 Download gff for FMO07019.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 2753415..2753660 9..254 100 -> Plus
2L 2756008..2756170 255..417 100 -> Plus
2L 2756245..2756294 418..468 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:55 Download gff for FMO07019.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2753415..2753660 9..254 100 -> Plus
arm_2L 2756008..2756170 255..417 100 -> Plus
arm_2L 2756245..2756294 418..468 96   Plus