FMO07021.5prime Sequence
793 bp (793 high quality bases) assembled on 2008-10-03
> FMO07021.5prime
CAGTCGACATGTCGCTTCTAACGGGCAGCGCCAATGCTGTGAAGTATACG
CTTTTCGGATTTAACTTAATTTTTTTGATCACTGGCATTATCTTGATTGC
CGTGGGAGCCGGAGTTGGCGCCGTCTATACGGGCTATAAGCTCTTCCTGG
CCGGAAAGTTCTTCTCGATCCCCACGTTCCTGATCGTGATTGGATCGTTC
ATCATCATAATCTCTTTCTTTGGTTGCTGGGGTGCCCTGAAGGAGAACTA
TTGCCTGGTGCTCAGCTTCTCGGTCATGCTGGCCATCATCTTCATCCTGG
AGCTGGCTGCTGGCATCAGTGGCTATGTGCTGCGCAATGACGCCTCCGAT
TTGATCAAAACTTCTCTGACTTACTCGCTGAACGAGTATAACAGTATCAA
TCCAAATGCGACCACGAAACTCTGGGATGACATCCAGGATGAGTTCGAGT
GCTGTGGTGTGACCTCATACAACGACTGGATCACCGCCTTCCCTAACGGC
GACCTGCCCATCTCCTGCTGCAACGTTCATGTCGGCGCAGTGGGCACATT
CACCTGCAATAATGCTCAGTCCAGCGTGGCAGACCGGCACAAAGTTGGAT
GCCTCGACGGATTCTCCGGATACATTTCCGCCCATGCGGTCAGCCTACGA
GCTGCAGGGGTGGTCATTTGCCATCCTCAGTTCTTTGGCGTAATCTTTGC
CTGCTACATTGCACGTGAGATTAAAATCCGTAATGGAATTACTGGTTTTA
TGGCAGCTTTCTAGACCATTCGTTTGGCGCGCGTTTCTAGGTA
FMO07021.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:22:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tsp29Fa-RC | 1052 | CG9494-RC | 167..910 | 9..752 | 3660 | 99.6 | Plus |
| Tsp29Fa-RB | 1247 | CG9494-RB | 362..1105 | 9..752 | 3660 | 99.6 | Plus |
| Tsp29Fa-RA | 963 | CG9494-RA | 78..821 | 9..752 | 3660 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:22:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8935151..8935742 | 77..668 | 2945 | 99.8 | Plus |
| 2L | 23513712 | 2L | 8935880..8935954 | 678..752 | 375 | 100 | Plus |
| 2L | 23513712 | 2L | 8934990..8935058 | 9..77 | 345 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:22:32 has no hits.
FMO07021.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:45:02 Download gff for
FMO07021.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp29Fa-RA | 70..824 | 1..756 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:33:23 Download gff for
FMO07021.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp29Fa-RA | 70..824 | 1..756 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:04:01 Download gff for
FMO07021.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp29Fa-RA | 70..824 | 1..756 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:04:01 Download gff for
FMO07021.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8934982..8935058 | 1..77 | 94 | -> | Plus |
| 2L | 8935152..8935754 | 78..680 | 99 | -> | Plus |
| 2L | 8935883..8935957 | 681..756 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:45:02 Download gff for
FMO07021.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8934982..8935058 | 1..77 | 94 | -> | Plus |
| arm_2L | 8935152..8935754 | 78..680 | 99 | -> | Plus |
| arm_2L | 8935883..8935957 | 681..756 | 97 | | Plus |
