FMO07024.5prime Sequence
722 bp (722 high quality bases) assembled on 2008-10-03
> FMO07024.5prime
CAGTCGACATGGTATCAAATAGCACTTATGCTTTGGGTCTCCTTTGCATT
TTGGTTTTTCTACAAGGAAGTACACCGATCCTAGCCCAGAGTAATGATTA
TGTGGCCCTATGTAACTTGACCGATAGCATTGCGGTCGATCTTGATCTGT
TCTCTGGAATTTGGTGGGAAGTGGCTCGTCAGCCGTCCGGCATTGATTTT
TGCACTGAGGTGAATATTACGGTGCTGAATAAAACCGAGGATAATGTGCT
GATCGATACCACATATGCCGTATCTCCCGATTACCCGTGGGTGAATCAAA
CCATGAACGCAACCATCACTGTGGAGAATAACACGGCGGCCGCGGATGGC
TACAACTTCACCTACTGGAACCCACCTGGTTATACCACCTATACAGTGTA
CAAGGTCCTTTACACTGACTACACCGATGTGGCCTTCCTTTGTGGCTATA
CCAACAAGACGGATAACGGCACATCCTTTGGAATTATCCTTGCTAGGGAT
CGTACCCCCACCACACAAATTTTGAATAAACTCGAGGGTCTTGGCTCTAG
TATATCTTCAAACTTTTTAAATGGCACCATGTCAGCGATAACTCAGGGCG
AATCTTGCTATGCACCATCCGGATCCAATCCTTCGACCATTATTTCCACA
ATGTTGATTGCCATGGCTATTATTCTTGGCATTTTTGCTGACCATCAAAT
AAATGCAAGCTTTCTAGACCAT
FMO07024.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:53:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31446-RA | 869 | CG31446-RA | 45..740 | 9..704 | 3480 | 100 | Plus |
| CG31446-RB | 884 | CG31446-RB | 45..755 | 9..704 | 3320 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:53:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15693328..15693783 | 149..604 | 2280 | 100 | Plus |
| 3R | 32079331 | 3R | 15693130..15693270 | 9..149 | 705 | 100 | Plus |
| 3R | 32079331 | 3R | 15693966..15694065 | 605..704 | 500 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:53:14 has no hits.
FMO07024.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:21:16 Download gff for
FMO07024.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31446-RA | 37..746 | 1..712 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:36:20 Download gff for
FMO07024.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31446-RA | 34..743 | 1..712 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:23:09 Download gff for
FMO07024.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31446-RA | 37..746 | 1..712 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:23:09 Download gff for
FMO07024.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15693122..15693270 | 1..149 | 97 | -> | Plus |
| 3R | 15693329..15693783 | 150..604 | 100 | -> | Plus |
| 3R | 15693966..15694071 | 605..712 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:21:16 Download gff for
FMO07024.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11518844..11518992 | 1..149 | 97 | -> | Plus |
| arm_3R | 11519051..11519505 | 150..604 | 100 | -> | Plus |
| arm_3R | 11519688..11519793 | 605..712 | 96 | | Plus |
