FMO07027.5prime Sequence
515 bp (515 high quality bases) assembled on 2008-10-03
> FMO07027.5prime
CAGTCGACATGTCCAAGTTTAGCCTCATCCTGTTGTCCGCCCTGCTGGGC
TGTCTTGTGTCCGGTGGAGCGGCTGGAACAATACGTGTGGATACCACCGG
CATCCAAGTGGTGGATAATATCCATGTCTTTGCCGCCCAATACCCGGGTC
TGCAGATCCAGCAGATGGAGAAGGAAATTGTGCCGGCCAAGGCCCGCGTC
GGAAGCCAGACCGTGCGCTACAACATGGGAGCCCGCATTCCGGGCGACGA
ACTGGTGGCCCAGACAGCCAACACTTACGAATTCCCACGGGCGCAAGATG
TGAGCCTGCAGCTTACCTATCCGGAGAACGGCAAGGGTGCCACTGTATCC
TACGTGGAGCTGCTCTGCACCCAGGACACCAACGAGGGCACCGCCTACGT
GGTCGCCGGAGGCATCGGCCAGAGCTTGATCTCCATCGTGCTGGAGGCCA
AGAACACCAAGAACTTCTCATACCAGGCTCTCTACTACGGAGTCAACGCA
AGCTTTCTAGACCAT
FMO07027.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:52:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15043-RB | 903 | CG15043-RB | 87..575 | 9..497 | 2445 | 100 | Plus |
| CG15043-RA | 694 | CG15043-RA | 87..575 | 9..497 | 2445 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:52:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18493521..18493775 | 497..243 | 1275 | 100 | Minus |
| X | 23542271 | X | 18493847..18494082 | 244..9 | 1180 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:52:46 has no hits.
FMO07027.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:21:08 Download gff for
FMO07027.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15043-RA | 87..575 | 9..497 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:33:37 Download gff for
FMO07027.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15043-RA | 83..571 | 9..497 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:22:50 Download gff for
FMO07027.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15043-RA | 87..575 | 9..497 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:22:50 Download gff for
FMO07027.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18493848..18494082 | 9..243 | 100 | | Minus |
| X | 18493521..18493774 | 244..497 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:21:08 Download gff for
FMO07027.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18387554..18387807 | 244..497 | 100 | <- | Minus |
| arm_X | 18387881..18388115 | 9..243 | 100 | | Minus |
