FMO07033.5prime Sequence
759 bp (759 high quality bases) assembled on 2008-10-03
> FMO07033.5prime
ACTGGAGCTGGACTCTTTTGGTTTTCTCGGCCCTGCTACTTCTCTCGGCG
GAGGTGGCCAATTCGGAGGAATGCGGCCAGGAGGAGTTCACCAAGTGCGC
CGAACCACTTGATATGCTGCATTTAACGTCGGACTTCTCGATTGGCCCGG
CCAAGAAGGAGGAACTGGAAAAACTTTGTCATGAGCTGCGCAAGGGCGTG
AGGTGCATACAGAGCTATACCCGGCGTTGCATGGATCTGCAGCAGAGGAA
TCAGTTCAACAAGCTCTACCACGACACCAACCAGTTCATCAGGGATCTGT
GCAACAAGGGTGCCTTCCAGGACGAGTACCTCAAGCATGTGCCCTGCTCT
GAAATGGCCAAGAAGGAGTTCGAGGTGTGCTCCAATCGTTATCGGGAGAC
CATGGTGTTCCTCAAGCCAAACAAGAACCAGGAAAACTCCGAGAACGGCA
CCCTGAACGAGAACATCAAGACCATTTGCTGCTCCATCAACGAACTTGTG
GATTGCTCGGAGGATGCTGCACGCAAGATCTGCGGCAATGAGGCGGCAAA
GTTTACGCGTCAACTGGTGGACAAATATGCCAACAGCCTGACCAAGATCT
ACTGCGAGGACTTCACCCCGAAATCCGGGCATCTGCAGGGATGGCGAGGG
CAATGGCTCCACGCGAGCAGCTGGCAGTATTTTGGGACTCCTGCTCACAG
GTACATTGCTGACACTGCTGGTCAGCAGAGGCAACAGATCTAGCTTTTTA
GACCATTCG
FMO07033.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:22:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9896-RA | 2043 | CG9896-RA | 289..1026 | 1..739 | 3640 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:22:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22995324..22995623 | 481..182 | 1500 | 100 | Minus |
| 2R | 25286936 | 2R | 22995890..22996041 | 181..30 | 760 | 100 | Minus |
| 2R | 25286936 | 2R | 22994686..22994829 | 739..595 | 645 | 97.9 | Minus |
| 2R | 25286936 | 2R | 22994885..22995000 | 596..481 | 580 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:22:19 has no hits.
FMO07033.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:01:17 Download gff for
FMO07033.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9896-RA | 289..1028 | 1..743 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:33:42 Download gff for
FMO07033.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9896-RA | 288..1027 | 1..743 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:12:32 Download gff for
FMO07033.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9896-RA | 289..1028 | 1..743 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:12:32 Download gff for
FMO07033.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22994684..22994827 | 597..743 | 96 | <- | Minus |
| 2R | 22994885..22994999 | 482..596 | 100 | <- | Minus |
| 2R | 22995324..22995623 | 182..481 | 100 | <- | Minus |
| 2R | 22995890..22996040 | 31..181 | 100 | <- | Minus |
| 2R | 22996377..22996406 | 1..30 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:01:17 Download gff for
FMO07033.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18882207..18882350 | 597..743 | 96 | <- | Minus |
| arm_2R | 18882408..18882522 | 482..596 | 100 | <- | Minus |
| arm_2R | 18882847..18883146 | 182..481 | 100 | <- | Minus |
| arm_2R | 18883413..18883563 | 31..181 | 100 | <- | Minus |
| arm_2R | 18883900..18883929 | 1..30 | 100 | | Minus |
