FMO07036.5prime Sequence
1139 bp (1014 high quality bases) assembled on 2008-10-03
> FMO07036.5prime
CAGTCGACATGAGTCAAACATTGATCCGTCGTCTCTTCAATCAAGCTTGT
AGCAGAAATATTTTTATTTTGAACCAAAGCTTGTTATCTTCACATGAACC
CATTTTACCAGGTTACATTGGTTTACGTAATACCAGCTTCTTTAACAAAT
TACCTGCTGAAGACATTTGGCGCGGAGTAACTGCGGTTAGCAATGCTGGA
AAAAAAAGAGGCCGTGGGAAAGGAAGTGGAAAAAAAGTTGCAAAGGATCT
TAACAAAGGGCAATCTATCGGATTCGGAAAATGCGGTCGCATATGGCCTG
GATTGAATTCACCTCTTATACGAGGAAACGAGTTAATTAATCAGCAGAAA
CTCAATGAGAATTTAGATAGAGAAAATGGTATTTTAAAATTACGCGATTC
AATGGGAAGTTTTAAATTGATGAAACTAAATCCAATAGACCGAGGTTGGT
CTGGAAGTAAAATGCCCGGCCGAAGCATTGGACCTCCTGATCCTGTTGGC
GACGAAGAGTTTGTGTCATTTGATACTAGAGTTTTAGAAAACAAAATTGT
TTTTATTATGAAAGGAAAATATGGGAAGAAAACGAAGATATTCCGTTCTT
TCAGTCACGGGAAATGGTAATGGTTTGGCAGGATTCGCTACCGCTAAAGC
GCCAGAAGTTCGTACGGCCCTTCGAAAATCAAAGAACCGAGCAGGACAAA
ACTAATCAATATAAGCCTTTGTGAAAATAGAACATTTTTCATGACTTTCC
TACAGATCTCGGAAAAACAAAAATTTTTTGTTTTCAGAAACCTGATGCGA
TACCGGCTTAGTCTGTCACCGGGCAATTCAGACAATTTGTAAAGTTATAG
GTATCAAGGGATTTATATGCCAAATTGAGGCGTCTACGAATATCCCAAAT
AATTGCAAAGGCATTTTTATTCGGTCTGATGACGCATACGTCCTATCAGT
TATATTGCTAACGAAACAAATTCAAACATTGTTCAACTGCAAAAGACAAG
AAATAGATTCATTGATGTAAAAGGAATGCCTTTTTCCTACTCACTTCTAC
GCAGACCCCAAGAATGACTTATATGCATTCACATAAGGAATCAATATTTT
TCCAGCGAAAAGGCCACGTACATTTTATGCTTATAGCAA
FMO07036.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:23:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpS5-RA | 1379 | CG40049-RA | 113..1248 | 9..1139 | 4905 | 96.6 | Plus |
| mRpS5-RC | 1422 | CG40049-RC | 156..1291 | 9..1139 | 4905 | 96.6 | Plus |
| mRpS5-RD | 479 | CG40049-RD | 113..254 | 9..150 | 710 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:23:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 24542410..24543290 | 151..1034 | 3835 | 97.9 | Plus |
| 3L | 28110227 | 3L | 24546110..24546788 | 353..1034 | 2825 | 97.2 | Plus |
| 3L | 28110227 | 3L | 24549608..24550286 | 353..1034 | 2825 | 97.2 | Plus |
| 3L | 28110227 | 3L | 24553106..24553784 | 353..1034 | 2825 | 97.2 | Plus |
| 3L | 28110227 | 3L | 24537475..24537616 | 9..150 | 710 | 100 | Plus |
| 3L | 28110227 | 3L | 24536289..24536364 | 75..150 | 185 | 82.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:23:04 has no hits.
FMO07036.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:45:16 Download gff for
FMO07036.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS5-RC | 150..1178 | 3..1034 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:33:36 Download gff for
FMO07036.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS5-RA | 139..1167 | 3..1034 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:04:17 Download gff for
FMO07036.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS5-RC | 150..1178 | 3..1034 | 97 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:04:17 Download gff for
FMO07036.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 24537469..24537616 | 3..150 | 97 | -> | Plus |
| 3L | 24542410..24543328 | 151..1068 | 96 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:45:16 Download gff for
FMO07036.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 24530568..24530715 | 3..150 | 97 | -> | Plus |
| arm_3L | 24535510..24536390 | 151..1034 | 97 | == | Plus |
