FMO07040.5prime Sequence
524 bp (524 high quality bases) assembled on 2008-10-03
> FMO07040.5prime
CCGGCAATGTGGACAAGACCCAGATACCGCCGCTGAACCAGAAACGCATC
CTGGCCTTCGTTAACCATTTCCTCGTCAGCACCTGCACCTTTCTAAATGA
ATTTGCCCTGGGCTGTGAGACGAAGTTCGTGGAGATGGAACGGCAGCTGC
AGAAGACGGAGGCCGCCCTCATCATCCTGGAGGCCAAGCTGGCGTCTATA
CCCACCGAGCACCATGTAGCGACTGAGGCTACCGAAGCGCCAGCGATATC
AAACCAGCAACGCAACGAAGAAGCATCCATGGTGGACACCACGGAACCAC
CGACCACCGAGAATCCTACGGAGCCGGAACTCCCGCCTGAATCGGTTGGT
GTGCGCGCTTGTGAAGATCAACGTTACAGAAAGTTCTTCAAAATGGTGCA
AGTGGGTGTGCCCGCACCGGCGGTTAAGCAGAAAATGCAATCCGAAGGTC
TGGAGCCGCGTATTTTAGACACACCCGATCTGATCCTGGCGGATGGCCAG
CGAGAGGCAAGCTTTCTAGACCAT
FMO07040.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:22:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7429-RA | 655 | CG7429-RA | 66..571 | 1..506 | 2515 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:22:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8041249..8041698 | 20..469 | 2235 | 99.8 | Plus |
| 2L | 23513712 | 2L | 8041759..8041795 | 470..506 | 185 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 22:22:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rt1c | 5443 | Rt1c RT1C 5443bp | 4334..4392 | 130..186 | 119 | 69.5 | Plus |
FMO07040.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:01:21 Download gff for
FMO07040.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7429-RA | 66..581 | 1..517 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:33:58 Download gff for
FMO07040.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7429-RA | 57..572 | 1..517 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:12:41 Download gff for
FMO07040.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7429-RA | 66..581 | 1..517 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:12:41 Download gff for
FMO07040.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8041171..8041193 | 1..23 | 100 | -> | Plus |
| 2L | 8041253..8041698 | 24..469 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:01:21 Download gff for
FMO07040.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8041171..8041193 | 1..23 | 100 | -> | Plus |
| arm_2L | 8041253..8041698 | 24..469 | 99 | -> | Plus |
