FMO07047.5prime Sequence
776 bp (776 high quality bases) assembled on 2008-10-03
> FMO07047.5prime
CAGTCGACATGCTGTCGCTCAAGATGAAACTCGAGGTACTGGGTCGTCCC
GATGTTGACATCCCGGTGGTGATGAGCGACCGCAAGGAATTCGCCAACAC
AGTCCTCTGGTTGGAGGACCAGAAGATCCGGCTTTACTCCATAGAGGATC
GCTGTAAGCTGCGCACTGTCGACAACCCTGAGATCTGGAAGGAGGGTTAC
TTAAAGTACTGTGCCGATTTGAGCATGCCGCCCCTGGAGACGCGGCAGGA
GCAGCTGGCCTGGATTGTCAGCTATGCTGTGCGCCTGGACTTCCTCGATG
ATCCTGATCAGTTTGCCTCGATTAACACCAAACAGGTGCCACCCCAAAGC
AATGGCAAGCAGTCCCAACAAAGGGTCCAGGCTATTTTCGATGGAAATAT
TAATACTCAGGAAAAAGCGTTCGTGGATGGAGTCCGGCTGCTGGCCAGCA
AACTGAATGTGCCGCACCACCCGAACCATCTGTTGCAGCTGGAGGCTATC
GCTCGCGTGGTGCACGAACGCCTCTCGCCCGCCGCCAAGGATCGCAAGCC
GGTAGTGGGTAAACCCTTCCCTTTTGACAAGGGAAACGACGTCGTCTCGT
CCAACGACTCTGCCCTGGACCTGCCCATGCGCATACTACGTCTTCTCCAG
ATCCAGAGCCTACGCGAGCTGCAGACACACATCAATGAGACCATTGTGGC
GGTGCAGAACATCACGGCCAATCCAAAGACTGATACCAAGCTGGGCAAAG
TGGGATTCGCAAGCTTCCTAGACCAT
FMO07047.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:23:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31249-RA | 1176 | CG31249-RA | 106..856 | 8..758 | 3740 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:23:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17686009..17686361 | 758..406 | 1750 | 99.7 | Minus |
| 3R | 32079331 | 3R | 17686511..17686838 | 405..78 | 1640 | 100 | Minus |
| 3R | 32079331 | 3R | 17686896..17686966 | 78..8 | 355 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:23:54 has no hits.
FMO07047.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:45:36 Download gff for
FMO07047.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31249-RA | 106..856 | 8..758 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:33:54 Download gff for
FMO07047.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31249-RA | 96..846 | 8..758 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:04:48 Download gff for
FMO07047.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31249-RA | 106..856 | 8..758 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:04:48 Download gff for
FMO07047.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17686009..17686361 | 406..758 | 99 | <- | Minus |
| 3R | 17686511..17686837 | 79..405 | 100 | <- | Minus |
| 3R | 17686896..17686966 | 8..78 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:45:36 Download gff for
FMO07047.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13511731..13512083 | 406..758 | 99 | <- | Minus |
| arm_3R | 13512233..13512559 | 79..405 | 100 | <- | Minus |
| arm_3R | 13512618..13512688 | 8..78 | 100 | | Minus |
