FMO07053.5prime Sequence
1138 bp (981 high quality bases) assembled on 2008-10-03
> FMO07053.5prime
CAGTCGACATGGCTCTGAGATTTGTGGCCCAGTCATGCAGATCCTTGCTG
CAACGTGGCGATCGTCCTTTGTCTTGGACCCGTACCCTCGCCCATTATCC
CGTCAACGATGCGATGTTCGGTCTGGATGAGGATCGCCAAAAGCTGCGGG
AAGTCGCCTTCAATTTCTTTCAGAAGGAATTGGCGCCTCTGGCCAAGGAA
ATCGACAAATTGGATAATTTCAAGGACATGCGCCCCTTCTGGAAGAAACT
AGGTGCTCTTGGCTTTTTGGGCATCACGGCGGAGCCAGATTTTGGTGGCA
CTGGGGGCAGCTATTTGGACCACTGCATCATCATGGAGGAATTCTCCCGT
GCTGCTGGTGGCGTGGCCTTGTCGTACGGAGCACACTCCAATCTGTGCAT
CAATCAGCTGACAAAGAACGGCACCCCCGAGCAGAAGGAGAAGTACCTTC
CCAAGCTGTGCAGTGGTGAGCATGTTGGAGGTCTGGCCATGTCCGAACCG
GGCGCTGGATCCGATGTCGTATCCATGAAGCTGCGTGCGGAGCGCAAGGG
AGACTACTATGTCCTGAATGGATCAAAATTCTGGATCACAAATGGATCTG
ATGCGGATACCTTGATAGTCTATGCCAAGACAGGAGGCAGCGGTGTTCCG
GACAAGCACGGCATTACCGCTTTCATAGTCGAAACCGCCTGGGAAGGATT
CAGTGTGGCCCAAAAGCTGGACAAGTTGGGCATGCGAGGCAGCAGTACCT
GTGAGCTGGTCTTCCAGGATCTGAAGGTGCCGGCCAAGAATATTCTGGGT
CTTGTAGATCAGGGGCGTCTATGTGCTCATGTCGGGATTGGACTTTGAAC
GACTAGTGCTGGCCGCCGGACCCGTTGGTCTGATGCAAGCCGCTTGCGAC
GTGCTTTCGACTATGCACACCAGCGCAAGCAGATGAACAAGTTAATTGAC
CAATTCCAGTTGCTGCAAGGAAAGATGGCCGATATGTACACCACACTGAG
CTGCGGGCAGGAGCTTTTTGTACACGGGGCCCAGAATCCTGTGGACGCGG
CAATCGCAGTCCCAAGATTGGTGCTTGCCGTTTTTCTCTCTAACACCGCC
GGTAGGCACCAAGGTGGGCTCGATGCAATCAGATCCTA
FMO07053.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:27:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6638-RA | 1514 | CG6638-RA | 83..1211 | 8..1138 | 5025 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:27:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8574783..8575497 | 1065..349 | 3120 | 96.9 | Minus |
| 3L | 28110227 | 3L | 8575780..8575996 | 224..8 | 1085 | 100 | Minus |
| 3L | 28110227 | 3L | 8575599..8575724 | 349..224 | 630 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:27:16 has no hits.
FMO07053.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:02:02 Download gff for
FMO07053.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6638-RA | 76..1161 | 1..1089 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:34:18 Download gff for
FMO07053.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6638-RA | 71..1156 | 1..1089 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:02:09 Download gff for
FMO07053.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6638-RA | 76..1161 | 1..1089 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:02:09 Download gff for
FMO07053.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8575599..8575724 | 224..349 | 100 | <- | Minus |
| 3L | 8575781..8575999 | 1..223 | 98 | | Minus |
| 3L | 8574770..8575496 | 350..1078 | 96 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:02:02 Download gff for
FMO07053.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8567870..8568596 | 350..1078 | 96 | <- | Minus |
| arm_3L | 8568699..8568824 | 224..349 | 100 | <- | Minus |
| arm_3L | 8568881..8569099 | 1..223 | 98 | | Minus |
