Clone FMO07054 Report

Search the DGRC for FMO07054

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:70
Well:54
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG12496-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO07054.5prime Sequence

543 bp (450 high quality bases) assembled on 2008-10-03

> FMO07054.5prime
CAGTCGACATGCTGAAGTGGACGGCATCGGCGCAGCGCCTGAACGAGATT
CCCGTGCACGATCAGGATGCCAACCAGCCGCAGAGGAGGAGGCTGCAGAG
GAGGCAGCGCCGTCAGCGGAGGGCCACCATTGCCAACAAGGAGAACGTGC
CTGACACCGTGGGCTACACCTCCACGCCAGTGCCCATTACCCGGCTGCGC
AACAGTCCCCTGGTCCTGGCGCCGCTGAGCGATATCCGGAATGTCACCCC
GGAGGCGGTGGTGCGCAGTCAGGCGCCCCAAAGGGTACAGAGTGTGCGAT
ACGCCACCACATTGCCACGTTTTGCCGAGGACTACTCGCCCAACGGACTG
CCCAGTGGTCAGCACTTGGCGCTGAGGGGCCTGGCTCCGTTGGATCCCTT
TCTGGGCCAGCCGCGCTATATTGTAGGCTCGGGTGCAGGAGTTACAAACT
CAAGCAGCGTAAACTGGACAAGGATTTGTGGCACCTTGAACCGGATTTCA
GGAAACGCAGTGCAAAGCCACCCACCCCCAAGTGGAAGTGCTC

FMO07054.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:47:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG12496-RA 1537 CG12496-RA 104..646 7..541 2425 97.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:47:01
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2410330..2410798 474..7 2265 99.4 Minus
Blast to na_te.dros performed on 2014-11-28 20:47:01 has no hits.

FMO07054.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:39:37 Download gff for FMO07054.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12496-RA 98..649 1..543 96   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:34:19 Download gff for FMO07054.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12496-RA 96..647 1..543 96   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:28:58 Download gff for FMO07054.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12496-RA 98..649 1..543 96   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:28:58 Download gff for FMO07054.5prime
Subject Subject Range Query Range Percent Splice Strand
X 2410253..2410802 1..543 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:39:37 Download gff for FMO07054.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 2304286..2304835 1..543 96   Minus