FMO07056.5prime Sequence
650 bp (650 high quality bases) assembled on 2008-10-03
> FMO07056.5prime
CAGTCGACATGCAGTTCACCAGGAGCCGTTTATTACTATCGATGGCCGTG
CTATCGGCACTGCTATCGTTATCGCTGGGCTTTCCCGCACCTCAGCAAAC
AAATTCCGAACTGGAGGCGAATTTCCAGGATAGCAGCGATCCCGACTTGA
ATCCTATCAACGCAGAGGAGGTGTTAAGTGTCCAGGAGCGCAACAAAAGA
AAACTGCCCGATGCCACATTCGAGGCTAAGAACGCAGTGCTCGGTTTTGT
GTTTGGCAAAATCGACAACTTCCTGGATACAAAGACGCGGGTGATCGAGC
AGCTGGACCGATCGAATATCGAAAAGAACAAGCAGTGGGACATCAAGTCG
CCGGTGCCCATCAAGGACTTCCAGACTCTGATTACCGCCGTGGTGTCGCC
AAAGATCCGTTCGATTGGCAACATTGCTAATGACCTGACCACCGGTGTGC
TGACCACGATTACCGCCTTTAGTGGCTCCTCCTCGGGCGGCGGAAATGCG
AACGCCGGATTGGGCAATGTGGTTTCCAAGTTCCTCAGCTTCTCGGGACC
CATCCTGCAGGGATCATCTGGCGGAGTTAATGGAATCGCCGGCGTGACGA
CACCAGCTCCCGATTCCGATGAGGCGGGCTACGCAAGCTTTCTAGACCAT
FMO07056.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:23:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43386-RD | 1134 | CG43386-RD | 257..880 | 9..632 | 3120 | 100 | Plus |
| CG43386-RC | 1036 | CG43386-RC | 159..782 | 9..632 | 3120 | 100 | Plus |
| CG43386-RB | 716 | CG43386-RB | 159..317 | 9..167 | 795 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:22:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9967577..9967951 | 632..258 | 1875 | 100 | Minus |
| X | 23542271 | X | 9970352..9970511 | 168..9 | 800 | 100 | Minus |
| X | 23542271 | X | 9968019..9968110 | 257..166 | 460 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 22:22:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Osvaldo | 1543 | Osvaldo OSV 1543bp | 888..932 | 573..617 | 108 | 71.1 | Plus |
FMO07056.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:01:29 Download gff for
FMO07056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43386-RC | 159..782 | 9..632 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:34:20 Download gff for
FMO07056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15251-RA | 153..776 | 9..632 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:12:53 Download gff for
FMO07056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43386-RC | 159..782 | 9..632 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:12:53 Download gff for
FMO07056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9967577..9967951 | 258..632 | 100 | <- | Minus |
| X | 9968019..9968108 | 168..257 | 100 | <- | Minus |
| X | 9970353..9970511 | 9..167 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:01:29 Download gff for
FMO07056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9861610..9861984 | 258..632 | 100 | <- | Minus |
| arm_X | 9862052..9862141 | 168..257 | 100 | <- | Minus |
| arm_X | 9864386..9864544 | 9..167 | 100 | | Minus |
