Clone FMO07062 Report

Search the DGRC for FMO07062

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:70
Well:62
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG12607-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO07062.5prime Sequence

491 bp (491 high quality bases) assembled on 2008-10-03

> FMO07062.5prime
CAGTCGACATGAAATTCTTTTTGCTATTGGCTTTGGCCCTTGTGGGCATT
GCTGCTGGAGCTCAGCTTCCTGACTCCGCCACCCAGGGACCCAATCCTCA
GGATATTGCCACCCCGGAGCCGGAGTACATTGATATCGACGAACCTGCAC
CGGTGGCTGCCGCACCTGCTCCTCGTCCTGTGGCCGCTGCTCCCCGTCCC
GTCTTCGCCGCCCCTGCTCCCATCGCTCGGCCAGTTGCTCATCCAGTGGC
TCGCCCCGTGGTTGTGGCCCAATCCTTCGTCCAGCAGCCCGTCCAGCAGC
AGATTGTCCAGAGGGCTCAGTACGTGGCGCCGGTGGCTCAGCAGGTGGTG
TTGCCGCAACAGCAGCTGGTGGGACACACCTACAACAGCAGGGCTGGATA
CCAGTACCGCCGTCCAGTCTATAACGAAACCATCAAAGAAACGACCAACA
AGAAGAAGTCAAGATCAAAAGCAGCAAGCTTTCTAGACCAT

FMO07062.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:11:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG12607-RB 691 CG12607-RB 103..567 9..473 2325 100 Plus
CG12607-RD 794 CG12607-RD 103..516 9..422 2070 100 Plus
CG12607-RC 1001 CG12607-RC 103..516 9..422 2070 100 Plus
CG12607-RD 794 CG12607-RD 616..670 419..473 260 98.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:11:00
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4447176..4447587 11..422 2060 100 Plus
3L 28110227 3L 4447894..4447948 419..473 260 98.2 Plus
Blast to na_te.dros performed on 2014-11-28 19:11:01 has no hits.

FMO07062.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:38 Download gff for FMO07062.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12607-RB 103..572 9..478 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:34:38 Download gff for FMO07062.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12607-RB 101..570 9..478 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:02:12 Download gff for FMO07062.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12607-RB 103..572 9..478 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:02:12 Download gff for FMO07062.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 4447174..4447587 8..422 99 -> Plus
3L 4447898..4447953 423..478 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:38 Download gff for FMO07062.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4447174..4447587 8..422 99 -> Plus
arm_3L 4447898..4447953 423..478 96   Plus