FMO07063.5prime Sequence
803 bp (803 high quality bases) assembled on 2008-10-03
> FMO07063.5prime
CAGTCGACATGCAGTGCACTCGTGCAGTTGCAAGACTGGCCGGCGGCCTA
GCGAGAACCGCATGGGCAACACAACATACGTATAAGCACAGGCCAGCGAT
ACTGGGACTGCTGGAGCAGCCATGCCGCTTGTGTTCATCCACCGGCGTTG
TGGATAATACCAATAAAACGAAACCCGGCACAGCGGAAGCCGCAGAAGGC
GGTATTCTGAAGAGAGTGCTCAACAAAGTGGGCTTCACACCGAACACAAA
GGCGCGCCTCAAGGTAACCAGTCATCTGCTGTACGAAAGCGTCGCCGACA
AGATCAACTATGTGACCTTTTTCCGCGACTTCAATCTGCCCAATACCTTT
AACTCCTGGTTCTTGGTCACCGAACTGCATGTTTGGCTACTCCTGATGCG
CTCCATGGCCGAGGGCTCCGAAACGGGCGAGGATGGACGCTTCCTGCGCA
ACTGCATTGTGGAGGCGATGTGGGGAGATGTTAACACACGCGCCAAGAAA
TTGGGAGCTCACAATCCTTCACGCACCCGTCAGCAAATCGAGACCTTATC
CGAGCAGTTCCAAGCGGCCCTAATCGCCTACGACGAGGGCATCATGTCCG
ACGATCGGGTTTTGGCCTGCGCCTTGTGGCGCCGCTTCTTCGAGATGAAC
TGTGATGATTACGCGCAGATCGAGCGACTGGTGAAGTACGTCCGCCAGCA
GGCCAGCATGCTGGACAGTTTGCCACGCGATCAGTTCATTGTCAAGCCGA
AAGTGGCATGGTTGGAATTGGACAAGTGCAAGGCTGCAAGCTTTCTAGAC
CAT
FMO07063.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:47:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10075-RA | 924 | CG10075-RA | 88..862 | 9..783 | 3860 | 99.9 | Plus |
| CG9948-RB | 1394 | CG9948-RB | 962..1238 | 783..507 | 1370 | 99.6 | Minus |
| CG9948-RB | 1394 | CG9948-RB | 1305..1394 | 507..418 | 450 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:47:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6957008..6957284 | 783..507 | 1370 | 99.6 | Minus |
| 3L | 28110227 | 3L | 6957351..6957604 | 507..254 | 1270 | 100 | Minus |
| 3L | 28110227 | 3L | 6957663..6957852 | 254..65 | 950 | 100 | Minus |
| 3L | 28110227 | 3L | 6957964..6958021 | 66..9 | 290 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:47:15 has no hits.
FMO07063.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:39:47 Download gff for
FMO07063.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10075-RA | 86..871 | 6..793 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:34:40 Download gff for
FMO07063.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10075-RA | 77..862 | 6..793 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:29:06 Download gff for
FMO07063.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10075-RA | 86..871 | 6..793 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:29:06 Download gff for
FMO07063.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6957352..6957603 | 255..506 | 100 | <- | Minus |
| 3L | 6957663..6957851 | 66..254 | 100 | <- | Minus |
| 3L | 6957965..6958023 | 6..65 | 98 | | Minus |
| 3L | 6956999..6957284 | 507..793 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:39:47 Download gff for
FMO07063.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6950099..6950384 | 507..793 | 98 | <- | Minus |
| arm_3L | 6950452..6950703 | 255..506 | 100 | <- | Minus |
| arm_3L | 6950763..6950951 | 66..254 | 100 | <- | Minus |
| arm_3L | 6951065..6951123 | 6..65 | 98 | | Minus |
