FMO07064.5prime Sequence
1162 bp (1018 high quality bases) assembled on 2008-10-03
> FMO07064.5prime
CAGTCGACATGACGACCAAAATGGCAATTAACGCAAAGGATATTTTCCGC
AATCAGCATCGCCTGATCCGCTTCCTCGAGCAGTCGATCCGGTTGTGCAG
CAACCAGTCTCTGAAAGCCGCCCAAGCGGCACAGTTGCAACAGAAATCGT
CGGCGGACTTCGAGATCACCGCCTCGCTGGACGCCCAATACACCAGTGCC
CCGGAGCCCATTAAGCATGACAAGAATCTGGGTCATCAGTTCCGTGCCTC
ACAGATTTCCGTGCGACTGGCCGCACCGGAGCAACTGCAGCCCAAGCCGG
ACAACGATGAGGAATTGGGTTTCGGCCGCCTATTCACCGATCACATGCTC
AAGATCTACTACCACAAGAGTTTGGGCGGATGGCAGCGACCGGAGATTAC
GCCGCTGGAGAATCTAGTGATGCATCCCGCCGCCAAGGTCCTGCACTACG
CCGTTGAGCTCTTTGAGGGCATGAAGGCGTACCGCGGCGTCGATGGCAAG
ATCCGCATCTTCCGGCCGGACATGAACATGAACCGCATGAACCTGGCCGC
CCAGCGATCCGGTCTGCCCACCTTCGAGGGCAAGGAGTTCGTCCAGTGCC
TGTCCCGCCTGCTGTCCATTGATTCCGAGTGGGTTCCTCACACGGACACC
GCCAGCTTGTACATCCGCCCCACACTGATCGGCATTGATCCCACACTGGG
AGTTGCTTCCTCCGACTCGGCCCTGCTCTACACGATCCTCAGCCCCGTGG
GCAGTTACTTTAAGACAGGCTCGTCCGGTGCCGTCTCCCTGCTGGCCGAT
CCCAGTTATGTTCGTCCCTGGCCAGGCGGCGTGGGCAATCGCAAAATGGG
CTCCAACTACGCACCCACAATCAATGTGCAGAAGGAGGCGGCCGCCAAGG
GACTGCAGCAGTGCTGTGGCTCTACGGCGAGGATCATCAGCTAACCGAAG
TGGGCACCATGAACATCTTTACGTCTTCGTGAACGATCAAGAGAACAAGA
ACTGGTTACCCCACCGCTGAGCGTCTATCTGCCGGTATCACCCGCGACTC
ATCCTGCGCAATAACGCATGGGGCAAGTTTAAAGTTAGGGAAGGCGAACT
ACACAATGCCAATGTCTGTGACTCCTCAACAAGGAGGGTGCTGAGCTCTT
GGGTGCGGAAAC
FMO07064.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:57:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1673-RA | 2510 | CG1673-RA | 373..1541 | 9..1162 | 5210 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:57:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13398583..13399004 | 37..458 | 2110 | 100 | Plus |
| X | 23542271 | X | 13399633..13399936 | 690..991 | 1390 | 98.7 | Plus |
| X | 23542271 | X | 13399329..13399561 | 457..689 | 1165 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:57:55 has no hits.
FMO07064.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:20:45 Download gff for
FMO07064.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1673-RA | 366..1478 | 1..1104 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:34:42 Download gff for
FMO07064.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1673-RA | 372..1484 | 1..1104 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:44:31 Download gff for
FMO07064.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1673-RA | 366..1478 | 1..1104 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:44:31 Download gff for
FMO07064.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13398585..13399004 | 39..458 | 100 | -> | Plus |
| X | 13399331..13399561 | 459..689 | 100 | -> | Plus |
| X | 13399633..13399939 | 690..993 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:20:45 Download gff for
FMO07064.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13292618..13293037 | 39..458 | 100 | -> | Plus |
| arm_X | 13293364..13293594 | 459..689 | 100 | -> | Plus |
| arm_X | 13293666..13293972 | 690..993 | 98 | -> | Plus |
