FMO07068.5prime Sequence
1137 bp (968 high quality bases) assembled on 2008-10-03
> FMO07068.5prime
CAGTCGACATGTCCAGGAACGAGGATACACCGATTGCCAAACGCGACTCT
GGACGGACGCGCCGTAGCAACTATGGCACGGCCCCATCCTTTCACCTGAT
GGAGCAGGGACAACCAGGTGTGAACGTAGTCGCTGGCAATGGCAACAACA
ATCACCCGGCAACGCCTGCAACACCTGCTCAAATTTTTTGTTTACACGGG
CGGTCCAACAACGTCGAAGTCCGGGATCATTGTCATCGTGCCCGCAGCGA
GGGCGTGGATGTGAAGGCTCGCCGAAAACTGATCATTGCGAGCATTTTGT
GTCTGGTTTTTATGATTGCCGAAATCGTGGGTGGCGTCCTATCGAACAGC
CTGGCCATCGCAACAGACGCCGCTCATTTGCTAACGGATTTCGCCAGTTT
TATGATCTCGTTGTTTGCCATCTGGATTGCCGGGCGACCATCTACGCAGC
GGATGTCCTTCGGCTGGTATCGGGCTGAGGTTATTGGCGCCATGGCCTCC
GTCTTCATGATCTGGGTCATCACGGGCATCCTCGTTTGGCTGGCCATCGG
ACGACTCATCAGCGGCGACTACGAGGTGAATGCGAAGATCATGCTGATCA
CATCCGGCCTGGCCATATTGGTGAATGTCATCATGGGCGTTCAGCTGCAG
CATGGCCATTCGCATGGCCTGGGCGGTGGGCATGGTCACAGCCATGGTGG
TTCCAAGAACGCATCCCATGTGCAGGCCACATCCACACCATGCTCCGATT
CGCCCAGCCAGCGTATTGAGGGCGGTGTGGCCACCGCGCCCGAAGATGCC
GAATTGCCTGGCGGCGGGCTGCCAACGTTCTCCTACCAAAATACCAAGTT
GGTCGATCCCACACTGGATTTGGGAATTGCTGCCGTTCTGGCCGAAACGG
CACCCGGATCACATCATCACGGCGGACCGTTGGACGCGAGCCGTCAACAT
GAATGTCCGGGCAGCCCTCATTCATGTGATGCGATGTCATCAAAGCGTGG
GAGTTTTGTCCCCTCCTGGCGTGATTTCCTTTTGCCCAAGTACTCCATCG
TGATCCCATTTGCACGTTGGTTCTCCATCATTGTGTTTCACCACGTCACG
ATCATGAGGATGGCTTGCTGGTGCCCTGAGGAATTCC
FMO07068.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:53:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ZnT35C-RA | 1740 | CG3994-RA | 121..1249 | 9..1124 | 5105 | 97.6 | Plus |
| ZnT35C-RB | 1812 | CG3994-RB | 403..1321 | 219..1124 | 4055 | 97.1 | Plus |
| ZnT33D-RB | 2257 | CG31860-RB | 1168..1484 | 348..664 | 265 | 73.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:52:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 15229892..15230354 | 1085..632 | 1710 | 94.8 | Minus |
| 2L | 23513712 | 2L | 15236605..15236785 | 631..451 | 905 | 100 | Minus |
| 2L | 23513712 | 2L | 15246174..15246352 | 219..41 | 895 | 100 | Minus |
| 2L | 23513712 | 2L | 15240464..15240586 | 452..330 | 615 | 100 | Minus |
| 2L | 23513712 | 2L | 15241409..15241523 | 332..218 | 575 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:53:01 has no hits.
FMO07068.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:21:12 Download gff for
FMO07068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ZnT35C-RA | 121..1258 | 9..1131 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:21:14 Download gff for
FMO07068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3994-RA | 183..1320 | 9..1131 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:23:00 Download gff for
FMO07068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ZnT35C-RA | 121..1258 | 9..1131 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:23:00 Download gff for
FMO07068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 15236605..15236784 | 452..631 | 100 | <- | Minus |
| 2L | 15240465..15240585 | 331..451 | 100 | <- | Minus |
| 2L | 15241411..15241521 | 220..330 | 100 | <- | Minus |
| 2L | 15246174..15246352 | 41..219 | 100 | <- | Minus |
| 2L | 15247563..15247594 | 9..40 | 100 | | Minus |
| 2L | 15229850..15230354 | 632..1123 | 94 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:21:12 Download gff for
FMO07068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 15229850..15230354 | 632..1123 | 94 | <- | Minus |
| arm_2L | 15236605..15236784 | 452..631 | 100 | <- | Minus |
| arm_2L | 15240465..15240585 | 331..451 | 100 | <- | Minus |
| arm_2L | 15241411..15241521 | 220..330 | 100 | <- | Minus |
| arm_2L | 15246174..15246352 | 41..219 | 100 | <- | Minus |
| arm_2L | 15247563..15247594 | 9..40 | 100 | | Minus |
