FMO07071.5prime Sequence
536 bp (536 high quality bases) assembled on 2008-10-03
> FMO07071.5prime
CAGTCGACATGGTTCGCCGTGGACGTTCAGCCAGTCCCCCGCCCTCCACT
CGTCGCACCGCACCTGTGCAGGCCCGTGCCCCCGCCCCGGCCCCGGCTCC
TGTCCAGACACGTGCCCCAGCACCGGCCGCCTCTGCCCCTGTTCCGGCGC
CCATGAGCGCTCCTCCCAGTGCCGTCGGCATGCCGGCACCGCAGCAGCCA
TCGATGTTCCAGCAGATGGCCGCCACCGCTGGAGGCGTGGCCGTGGGCTC
AGCCATTGGACACACCGTGGGTCATGGATTGACCTCGCTGTTCAGCGGAT
CTGGCGACAAGGAGGCCGCTGCTCCCGCTCCGGCGGCAGCCGCTCCTGCC
CCCCAGCAGCCATACTACGCCCAGCAGCAGCAGCCCAATGAGCCGCAGGG
AGCCTGCGCCTGGGAGCTCAAACAGTTCATCCAGTGCGCCCAGGGTCAGG
CGGATCTTACCCTCTGCGAGGGATTCAACGAGGCGCTGCGGCAGTGCAAG
CAGAGCCACCATCTCCAGGCAAGCTTTCTAGACCAT
FMO07071.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:10:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5010-RA | 997 | CG5010-RA | 137..646 | 9..518 | 2550 | 100 | Plus |
| CG5010-RB | 1260 | CG5010-RB | 447..909 | 56..518 | 2315 | 100 | Plus |
| CG5010-RB | 1260 | CG5010-RB | 107..153 | 9..55 | 235 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:10:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17149833..17150296 | 55..518 | 2320 | 100 | Plus |
| X | 23542271 | X | 17149137..17149183 | 9..55 | 235 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:10:47 has no hits.
FMO07071.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:32 Download gff for
FMO07071.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5010-RA | 129..646 | 1..518 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:34:23 Download gff for
FMO07071.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5010-RA | 92..609 | 1..518 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:02:05 Download gff for
FMO07071.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5010-RA | 129..646 | 1..518 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:02:05 Download gff for
FMO07071.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17149129..17149183 | 1..55 | 92 | -> | Plus |
| X | 17149834..17150296 | 56..518 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:32 Download gff for
FMO07071.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17043162..17043216 | 1..55 | 92 | -> | Plus |
| arm_X | 17043867..17044329 | 56..518 | 100 | | Plus |
