FMO07081.5prime Sequence
686 bp (686 high quality bases) assembled on 2008-10-03
> FMO07081.5prime
TAGTGTGATATCGCGGGGCACCACAGTGCTGGCGAAGTTTGCGGAGTGCG
TCGGCAACTTTGCCGAAGTGACGGAGCACATAATCGGACGGATCGGGGTG
CATAACCACAAGATGACCTACACACACGGAGACTACCTGATCCACTACAC
CTGCGAGAACAAACTGGTCTACATGTGCATCACCGACAACGAGTTCGAAC
GGTCGCGGGCCTTCCTCTTCTTGGCGGATATCAAGCAGAAGTTTATCCAG
ACTTACGGCCTACAGGTGGCCACCGCCATCGCCTACTCCATGAACACCGA
GTTCTCCAAGATCCTGGCCCAGCAGATGGTCTATTTCAGTCAGTCCCGGG
AGGTGGACACCATTTCGCGAGTACATGGTCAGATTGACGAGCTTAAAGAC
ATTATGGTTAAGAATATTGACAGCTTGCGGGATCGCGGCGAGAAACTAGA
GCTGCTCGTCAACATGACCGAAAACTTGAGCAATAATTCCGTTGCATTCC
GTAAGGCCTCCCGAAATTTGGCTCGTCAAATGTTTTGGAAGAACATCCGC
GTCTACGTGGTGGTGGGTCTGGTGATAACCTTCATCGTTTACGTGATTGT
GAGCATGGCCTGGGGTGGCCCTCGCTTGGCAGTCCTGTGTTGCAAGCTTT
TCTAGACCATTCGTTTGGCCCGCGGGGCCCGCGTAA
FMO07081.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:27:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vamp7-RC | 1148 | CG1599-RC | 392..1031 | 1..641 | 3150 | 99.5 | Plus |
| Vamp7-RA | 1090 | CG1599-RA | 334..973 | 1..641 | 3150 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:27:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9841540..9841768 | 419..191 | 1145 | 100 | Minus |
| 2R | 25286936 | 2R | 9841846..9842036 | 191..1 | 955 | 100 | Minus |
| 2R | 25286936 | 2R | 9841197..9841349 | 641..488 | 705 | 98.7 | Minus |
| 2R | 25286936 | 2R | 9841408..9841476 | 487..419 | 330 | 98.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:27:33 has no hits.
FMO07081.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:02:16 Download gff for
FMO07081.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vamp7-RA | 334..986 | 1..650 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:02:20 Download gff for
FMO07081.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vamp7-RA | 334..986 | 1..650 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:02:20 Download gff for
FMO07081.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9841184..9841349 | 488..650 | 96 | <- | Minus |
| 2R | 9841408..9841475 | 420..487 | 98 | <- | Minus |
| 2R | 9841540..9841768 | 191..419 | 100 | <- | Minus |
| 2R | 9841847..9842036 | 1..190 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:02:16 Download gff for
FMO07081.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5728689..5728854 | 488..650 | 96 | <- | Minus |
| arm_2R | 5728913..5728980 | 420..487 | 98 | <- | Minus |
| arm_2R | 5729045..5729273 | 191..419 | 100 | <- | Minus |
| arm_2R | 5729352..5729541 | 1..190 | 100 | | Minus |
