FMO07083.5prime Sequence
800 bp (800 high quality bases) assembled on 2008-10-03
> FMO07083.5prime
CAGTCGACATGAAGGTGTTCCTAGCTATCCTGGCTCTGGCCGTGGCTTCG
GCCTCCGCCTTCGACGAGAAGGTCTTCGTAAAGGACCTGCCCAAGGCCAC
CAAGATTGAGGGTCGTATCACCAACGGATACCCCGCCCCCGAGGGTAAGG
CTCCCTACACTGTGGGTCTTGGCTTCAGCGGAGGCTGGTGGTGCGGTGGC
TCCATCATCGCCCACGACTGGGTCCTGACTGCCGAGCACTGCATCGGAGA
TGCCGCTTCCGTGATCGTTTACTTCGGTGCCACCTGGCGCACCAACGCCC
AGTTCACCCACACCGTTGGCAACGGCAACTTCATCAAGCATTCCAACGCT
GATATCGCCCTGATCCGCATCCCCCACGTCGACTTCTGGCACATGGTGAA
CAAGGTGGAGCTCCCCAGCTACAACGACCGTTACAACAACTACAACGAAT
GGTGGGCCGTCGCTTGCGGATGGGGTGGCACCTACGACGGCAGCCCACTG
CCCGACTGGCTGCAGTGCGTCGATCTCCAGATCGTCCACAACGAAGAGTG
CGGCTGGACCTACGGCAGCGTTGGCGACAACGTCATCTGCACCCGCACCG
TCGACGGCAAGTCCATTTGCGGAGGTGACTCTGGCGGTCCCCTTGTCACA
CACGACGGCTCCAAGCTGGTGGGAGTTAGCAACTTCGTCTCCTCCAACGG
CTGCCAGTCGGGTGCTCCTGCTGGATTCCAGCGCGTCACCTACCACTTGG
ACTGGATCCGTGACCACACTGGCATCTCTTACGCAAGCTTTCTAGACCAT
FMO07083.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:53:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Jon25Biii-RA | 827 | CG8871-RA | 19..793 | 8..782 | 3860 | 99.9 | Plus |
| Jon66Cii-RA | 830 | CG7170-RA | 113..786 | 109..782 | 1735 | 84 | Plus |
| Jon66Ci-RA | 838 | CG7118-RA | 17..795 | 7..782 | 1620 | 80.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:53:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4949975..4950749 | 782..8 | 3860 | 99.9 | Minus |
| 3L | 28110227 | 3L | 8392864..8393537 | 782..109 | 1735 | 83.8 | Minus |
| 3L | 28110227 | 3L | 8391556..8392334 | 7..782 | 1545 | 80.4 | Plus |
| 3R | 32079331 | 3R | 30487103..30487528 | 782..354 | 685 | 77.9 | Minus |
| 2L | 23513712 | 2L | 4954633..4955051 | 475..81 | 630 | 77.8 | Minus |
| 2L | 23513712 | 2L | 4952287..4952494 | 782..575 | 335 | 77.4 | Minus |
| 3L | 28110227 | 3L | 9641508..9641703 | 458..656 | 285 | 77.4 | Plus |
| 3L | 28110227 | 3L | 6052754..6052858 | 354..458 | 270 | 83.8 | Plus |
| 3L | 28110227 | 3L | 6053956..6054059 | 457..354 | 235 | 81.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:53:08 has no hits.
FMO07083.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:21:15 Download gff for
FMO07083.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Jon25Biii-RA | 13..804 | 1..794 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:35:05 Download gff for
FMO07083.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Jon25Biii-RA | 9..800 | 1..794 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:23:04 Download gff for
FMO07083.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Jon25Biii-RA | 13..804 | 1..794 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:23:04 Download gff for
FMO07083.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4949964..4950755 | 1..794 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:21:15 Download gff for
FMO07083.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4949964..4950755 | 1..794 | 98 | | Minus |
