FMO07087.5prime Sequence
647 bp (621 high quality bases) assembled on 2008-10-03
> FMO07087.5prime
CAGTCGACATGGAGGACCATAATACAGCCAACCTGTCGGAGCCAGCATCT
CCAGCTAATTCTGTGGCATCCGCAGAAATTGCCGCCGAGTTCGCTGCGCT
TTCCGTCGAGGAGAAGGAGCAGCGTCGGGCTGAGTGGAGTCAGGAGCTCG
CCCGCGTTGAGGAAGAGATCAATACGCTGCGAACTGTCCTAGCCTCCAAG
ACGCGCCATGCCTCCGATCTCAAGCGCAAGCTGGGCATCACCGTCTGGAA
GGAGGTGACGGACGACGTGAACCAGGGCCTTAAGAACCTCAAGGAGAGCA
CTGTATACCAACGCACTGAGTCGGTGCTAAAGTCCACGGGCGAGAAGACC
GCCTCGGTGTTTGGCAGCATCACCAGTGGCATTTCGTCGAAACTGTCGCA
AATGAAAAACTCCGAATCGATGCGTTCTATCGAGGCTTCGGTGGGCTCTG
CCTACGAGAACGTTAAAACCAAGGTGACATCCCGCTCGGGTTCGGTGTCC
AGTTTCCCAGATGCCCTGGACGAGAATAACACATCCTCGGGTCTGAATTC
ACCCACAGACTCACTCCCGAAAGCAAGCTTTCTTTTTCATATTTTTTTGG
TGGGGCGCCCGGGGGAGGGGGATTAAAAAATTAAATTATTATTAATT
FMO07087.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:38:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5174-RH | 1472 | CG5174-RH | 132..695 | 9..572 | 2820 | 100 | Plus |
| CG5174-RM | 1514 | CG5174-RM | 184..737 | 19..572 | 2770 | 100 | Plus |
| CG5174-RG | 848 | CG5174-RG | 132..590 | 9..467 | 2295 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:38:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18424323..18424486 | 141..304 | 820 | 100 | Plus |
| 2R | 25286936 | 2R | 18424872..18425034 | 305..467 | 815 | 100 | Plus |
| 2R | 25286936 | 2R | 18424127..18424252 | 19..144 | 630 | 100 | Plus |
| 2R | 25286936 | 2R | 18425340..18425444 | 468..572 | 525 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:38:26 has no hits.
FMO07087.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:34:15 Download gff for
FMO07087.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5174-RH | 125..703 | 1..582 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:35:39 Download gff for
FMO07087.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5174-RH | 128..706 | 1..582 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:36:28 Download gff for
FMO07087.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5174-RH | 125..703 | 1..582 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:36:28 Download gff for
FMO07087.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18424872..18425034 | 305..467 | 100 | -> | Plus |
| 2R | 18425340..18425444 | 468..572 | 100 | == | Plus |
| 2R | 18424127..18424251 | 19..143 | 100 | -> | Plus |
| 2R | 18424326..18424486 | 144..304 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:34:15 Download gff for
FMO07087.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14311632..14311756 | 19..143 | 100 | -> | Plus |
| arm_2R | 14311831..14311991 | 144..304 | 100 | -> | Plus |
| arm_2R | 14312377..14312539 | 305..467 | 100 | -> | Plus |
| arm_2R | 14312845..14312949 | 468..572 | 100 | == | Plus |
