FMO07094.5prime Sequence
1136 bp (1035 high quality bases) assembled on 2008-10-03
> FMO07094.5prime
CAGTCGACATGTGCACTTGCACGGAACAATGGAAGAACGACGAGGAAATA
ATCATTTTCCAGGAGTATTTGCGCATTCCCTCGGTGCATCCAGACGTGGA
CTACACTGCATGCGTGGAGTTCCTAAAACGCCAGGCTAACAAACTTAATC
TCCGCGTGGACGTGGTGTATCCTGTTGTGCCTTCGAAACCGGTGGTGATT
ATGAAGTGGCTGGGCAAGCATCCCGAGCTGAAATCCATTATATTGAACTC
ACACATGGACGTGGTGCCCGTGTTTCCCGAAAAGTGGACCCATGAGCCGT
TTGGTGCCCACATAGACGCCCAAGGCCGGATTTATGCACGCGGTGCCCAG
GACATGAAGTCCGTGGGATGTCAGTACATGGCTGCGGTCCGTGCACTCAA
AGCCAGTGGCTATCAGCCAAAAAGGACCGTATATTTGACTTTTGTGCCCG
ACGAGGAAACTGGCGGACACATGGGCATGGCTGAATTCGTCAAGGGTGAT
TACTTCAAAGCCATGAATGTGGGCTTTAGCCTGGACGAGGGCATCGCCAG
TGAAGATGACACTTATCCTGTATTTTACGCCGAGCGTACATTGTGGCAAC
TTCGATTTAAATTCAGTGGCACTTCAGGTCATGGATCGCTGCTGCACAAA
AGCACGGCTGGCGAAAAGTTTCACTTTGTGATGGATAAGCTGATGAAGTT
CCGAGAAACCCAGGTCAAGCTACTGGCCGAGGACTCCTCCTTGCAGTCCG
GTGATGTGACCACTTTGAACCTCGACCCAACTCACGGTGGCGTCCAAAGC
AATGTGGTTCCCCCCGTACTAGAAGCCACTTTTGATATTCGCATAGCCAT
CAACCAGAATGCCGATGCAATGAGAATCAGATTCGCGAGTGTGCAACGAA
GTCGGTGCCGAGTGGAACTGGATTTCACGCTGAATGCCCCTCGTGGTGAC
CAGATAGACGACTCCAATCCCTACTGGCTGGGCTTCAAAAGGACTAGATG
AACTAGGTTTGATCACCCATACCCGAGTTTTCCCCGGCGCCACCGATACT
TCTACGTTCGGCAGTGGAATTCCCGCTTTGGGATTCACCCATCACACACC
TGGTGCTGCGCAAATCATGATGAAATTTGCGGTCGA
FMO07094.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:27:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17110-RB | 1677 | CG17110-RB | 82..1224 | 9..1132 | 5125 | 97.6 | Plus |
| CG17110-RC | 2911 | CG17110-RC | 1573..2715 | 9..1132 | 5125 | 97.6 | Plus |
| CG17110-RA | 1520 | CG17110-RA | 182..1324 | 9..1132 | 5125 | 97.6 | Plus |
| CG17110-RC | 2911 | CG17110-RC | 362..879 | 335..852 | 375 | 72.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:27:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23093830..23094321 | 106..597 | 2460 | 100 | Plus |
| 3R | 32079331 | 3R | 23094380..23094794 | 598..1004 | 1585 | 97.1 | Plus |
| 3R | 32079331 | 3R | 23093679..23093775 | 9..105 | 485 | 100 | Plus |
| 3R | 32079331 | 3R | 23095959..23096141 | 185..367 | 240 | 75.4 | Plus |
| 3R | 32079331 | 3R | 23094850..23094933 | 1005..1085 | 230 | 90.5 | Plus |
| 3R | 32079331 | 3R | 23092285..23092509 | 335..559 | 225 | 73.3 | Plus |
| 3R | 32079331 | 3R | 23099861..23099980 | 248..367 | 195 | 77.5 | Plus |
| 3R | 32079331 | 3R | 10676732..10676856 | 368..244 | 190 | 76.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:27:42 has no hits.
FMO07094.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:02:21 Download gff for
FMO07094.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17110-RA | 173..1325 | 1..1135 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:35:24 Download gff for
FMO07094.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17110-RA | 173..1325 | 1..1135 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:02:24 Download gff for
FMO07094.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17110-RA | 173..1325 | 1..1135 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:02:24 Download gff for
FMO07094.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23093670..23093775 | 1..105 | 96 | -> | Plus |
| 3R | 23093830..23094321 | 106..597 | 100 | -> | Plus |
| 3R | 23094380..23094794 | 598..1004 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:02:21 Download gff for
FMO07094.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18919392..18919497 | 1..105 | 96 | -> | Plus |
| arm_3R | 18919552..18920043 | 106..597 | 100 | -> | Plus |
| arm_3R | 18920102..18920516 | 598..1004 | 97 | -> | Plus |
