FMO07104.5prime Sequence
696 bp (696 high quality bases) assembled on 2008-10-06
> FMO07104.5prime
ACACAAAGTGAGCGCCTCTTGCAGGCCCAGAATCGAAGAAAGTTCAGTTT
TCCAGCCACACTACATTCCGCATCACTACTGGAGGTGGGTGGTGGTCCCA
AGGAGACCACGAGGCGTAGGTTGAGCAATGTCAGCGATGCCGTAACCAGG
AAACTCTCCTACACGATTGGCTGGAAGGCGGCACAGATTCCAGCGCAGGA
TATCATTTCTCAGGGTCGTTGCCTGTGCGGTCATTATATCAAGAGACGCC
TCAGAAGATCTGGTTTGTTCAACAAAAAGCTGGGACTGCAGCGCATACGT
AGCATACTGGGCTCCACCTCCATGGGCATTGTGCGCGATGTGTTTCCAGC
GGTCCAAGTGCTGGGCGATGAACTGGAGCGCATGCATCCCCGGATATACA
ACGGAGTAGCTCGTCAGATTTGTCGGAATCCGGGTGGTGAGTTCCATACT
CCGGATGCTGTGAGCTTGCTTTTGGGAGCCGTTGGTCGCGAGCTCTTCCG
GGTGGAGATTACGTGGAGCAAGGTGATCTCTCTGTTCGCCATCGCCGGTG
GGCTGTCCGTTGATTGTGTACGCCAAGGACATCCGGAATACTTGCCCAAG
TTGATGGAGAGCGTTTCGAGGTGATCGATGATGAGCTGGTTCCGTGGATA
ACGAGAATGGTGGTTGGAGTGGCATCAACACACACGTTTTACCCAC
FMO07104.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:16:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Buffy-RA | 1038 | CG8238-RA | 202..899 | 1..696 | 3365 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:16:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11688019..11688328 | 360..667 | 1420 | 98.7 | Plus |
| 2R | 25286936 | 2R | 11687524..11687737 | 1..214 | 1025 | 98.6 | Plus |
| 2R | 25286936 | 2R | 11687811..11687959 | 212..360 | 745 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:16:56 has no hits.
FMO07104.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:59:41 Download gff for
FMO07104.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Buffy-RA | 202..899 | 1..696 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:36:44 Download gff for
FMO07104.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Buffy-RA | 221..918 | 1..696 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:10:04 Download gff for
FMO07104.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Buffy-RA | 202..899 | 1..696 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:10:04 Download gff for
FMO07104.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11687524..11687736 | 1..213 | 98 | -> | Plus |
| 2R | 11687813..11687959 | 214..360 | 100 | -> | Plus |
| 2R | 11688020..11688328 | 361..667 | 98 | -> | Plus |
| 2R | 11688390..11688418 | 668..696 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:59:41 Download gff for
FMO07104.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7575029..7575241 | 1..213 | 98 | -> | Plus |
| arm_2R | 7575318..7575464 | 214..360 | 100 | -> | Plus |
| arm_2R | 7575525..7575833 | 361..667 | 98 | -> | Plus |
| arm_2R | 7575895..7575923 | 668..696 | 100 | | Plus |
